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10 protocols using ed50 electrochemical detector

1

Monosaccharide Composition Analysis of GALT Assay Products

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Twenty-five standard GALT assays were pooled to generate sufficient 14C-products for acid hydrolysis and monosaccharide composition analysis as described by Liang et al. [29 (link)] and Basu et al. [17 (link)] with minor modifications. The product from total acid hydrolysis was dissolved in deionized water and analyzed on a CarboPac PA20 column (4 × 250 mm; Dionex) in a BioLC system using pulsed amperometric detection (ED50 electrochemical detector; Dionex). The column was equilibrated at a flow rate of 0.5 mL/min with 200 mM NaOH for 10 min, double distilled water for 10 min, and 1mM NaOH for 15 min. The sample was eluted with 1 mM NaOH at a flow rate of 0.5 mL/min.
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2

Pectin Composition Analysis Protocol

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The GalA content of pectin was measured based on the method described by Blumenkrantz and Asboe-Hansen [22 (link)]. The DM of pectin was determined based on the titrimetric method using NaOH according to the Food Chemical Codex (FCC, 2004) [23 (link)]. The monosaccharide compositions were determined based on the method of Petkowicz, et al. [24 (link)] with slight modification. MPP and CCP (5 mg) were hydrolyzed using 3 mL of 2 M trifluoroacetic acid (TFA) for 2 h at 121 °C. Then methanol was added under blowing nitrogen to remove the TFA. Before analysis, the sample after nitrogen blowing (monosaccharide after acid hydrolysis) was dissolved in ultrapure water at a ratio of 1:10, passed through a 0.22 μm ultrafiltration membrane. The HPAEC-PAD analysis was performed exactly as described in Neckebroeck, et al. [25 (link)] using a Thermo ICS5000+ system (ICS5000+, (Thermo Fisher Scientific, Waltham, MA, USA) equipped with a Dionex™ CarboPac™ PA10 (250 × 4 mm, 10 mm) and ED50 electrochemical detector (Dionex, Sunnyvale, CA, USA). The injection volume was 20 μL and the column temperature was 30 °C. The mobile phase A was H2O, mobile phase B was 100 mmol/L NaOH, The specific parameters of the mobile phase are shown in Table 1:
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3

Quantitative Analysis of Yeast Cell Wall Carbohydrates

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Active yeast cells were disrupted by shaking with glass beads [23 (link)], and the cell wall carbohydrates were hydrolyzed with 2 M H2SO4 at 100°C for 4 h according to the method of Dallies et al. [34 (link)]. For the extraction and purification of 1,3-β-glucan and 1,6-β-glucan, the cell wall fractions were extracted with 3% NaOH at 75°C for 6 h. The alkali-insoluble carbohydrates were then extracted with 0.5 M acetic acid at 90°C for several times. The alkali-insoluble and alkali-soluble glucan were the 1,3-β-glucan and 1,6-β-glucan respectively [35 (link)]. A Dionex Bio-LC system (ICS2500, USA) coupled with an ED 50 Electrochemical Detector was used for the quantitative analysis of the cell wall carbohydrates. Carbohydrates were analyzed by a Zorbax NH2 column (250 × 4.6 mm, 5 μm diameter, Agilent Technologies, USA) with a guard column (12.5 × 4.6 mm, 5 μm diameter, Agilent Technologies, USA). Deionized water: 0.5 mol/L NaOH (3.5: 96.5; v/v) was used as the isocratic mobile phase with a flow rate of 1 mL/min at room temperature (30°C). Chitin content was determined using an enzymatic method, and the released glucosamine was quantified as described in other reports [36 (link)].
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4

Fructan Molecular Weight Determination

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Fructans concentration was measured by gel permeation chromatography (GPC) using a HPLC equipped with a linear Ultrahydrogel column (Waters, Japan) using running conditions described by Porras-Dominguez et al. (16 (link)), 0.8 mL/min of 0.1 mM NaNO3 at 30°C as eluent. Fructans profile was determined by HPAEC-PAD, using an ED50 electrochemical detector (Dionex, USA) and a CarboPac® PA200 column for carbohydrate analysis (Thermo scientific, USA) using running conditions stablished by Mellado-Mojica and López (17 (link)). Product elution was carried out by applying a sodium acetate gradient with 100 mM NaOH at 0.5 mL min−1 as follows: 5–100 mM sodium acetate in 25 min, 100–400 mM in 60 min, and 10 min for initial condition re-equilibration (5 mM sodium acetate) at 30°C. We determined the number average molar mass (Mn), mass average molar mass (Mw), and polydispersity index (PI) for each sample, as described by Porras-Dominguez et al. (16 (link)). From these data we estimated the degree of polymerization by number (DPn) and the degree of polymerization by mass (DPw) using linear regression analyses with data for glucose, sucrose, 1-ketose, nystose, fructosyl-nystose, as well as 5.2, 11.6, 23.8, and 48.6 KDa dextran as standards.
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5

Determination of Mannitol in V. volvacea

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For the determination of mannitol content, mycelia were freeze-dried and ground into powder by a TissueLyser (Qiagen, Hilden, Germany). The method for determining mannitol levels in V. volvacea mycelia by high-performance anion chromatography-pulsed amperometric detection (HAPEC-PAD) has already been described [20 , 21 (link)].
The samples (0.1 g) were ultrasonically extracted in 10 mL of ultrapure water for 30 min and centrifuged at 3600 × g for 20 min at temperature of less than 25°C. Then, the supernatant was filtered with a 0.45-μm filter (Millipore, Bedford, MA, USA) and diluted 5 times for analysis by an ICS2500 HPAEC-PAD system comprising a GP50 quaternary gradient pump, an EG50 automatic eluent generator, an LC30 column oven, a Dionex CarboPac MA1 column, and an ED50 electrochemical detector (Dionex, Sunnyvale, CA, USA). The temperature of the column was 30°C, the mobile phase was 480 mM NaOH solution, and the flow rate was 6.67 μL s−1. The adopted external standard mixture included mannitol (Sigma, USA). Each standard was dissolved in deionized water and diluted to several standard solutions to generate a calibration curve [22 (link)].
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6

Quantification of Sialyllactose by HPAEC-PAD

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Quantification of sialyllactose was carried out by HPAEC-PAD analysis using a Dionex BioLC system consisting of GS50 gradient pumps, ED50 electrochemical detector, AS50 chromatography compartment coupled to an AS50 autosampler (Dionex Corp., Sunnyvale, CA). Samples (10 µL) were injected on a CarboPac™ PA1 (4 mm×250 mm) analytical column (Dionex Corp., Sunnyvale, CA) at a flow rate of 1 mL/min. The elution program was based on the method described in [20] except for the modifications in the eluent system given below. The eluent system comprised of deionised water (A), 0.5 M NaOH (B), 1 M NaOAc (C). For the first 3 min an isocratic elution of 80: 20 (% A:B) was applied, which was followed by a linear gradient from 80∶20 (% A:B) to 60∶20∶20 (% A:B:C) from 3 to 27 min. Strongly retained anions were removed from the column by isocratic elution at 40∶20∶40 (% A:B:C) from 27 to 31 min. Subsequently, the column was re-equilibrated for 7 min with 80∶20 (%A:B).
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7

HPAEC-PAD Analysis of Hydrolyzed Samples

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The analysis of the hydrolyzed samples was performed with a High-Performance Anion Exchange Liquid Chromatography with Pulsed Amperometric Detector (HPAEC-PAD) Dionex system composed of LC25 Chromatography Oven, GP50 Gradient Pump, AD25 Absorbance Detector, ED50 Electrochemical Detector, and equipped with a Column CarboPac PA10. The flow rate was maintained at 1 mL/min at room temperature. The injection volume was 20 mL. HPLC-grade H2O was used as eluent A, while 0.05 and 0.8 M NaOH were used as eluent B and C, respectively. The gradient system was as follows: 0–20 min, 60% A and 40% B; 20–27 min, 75% A and 25% C; 27–31 min, 100% C; 31–42 min, 60% A and 40% B. Standard solutions of fucose, galactosamine, glucosamine, galactose, glucose, and mannose were prepared and analyzed at different concentrations in order to obtain a calibration curve for each analyte. Limit of detection (LOD) and limit of quantification (LOQ) were 0.003 and 0.009 µg/mL, respectively. Each sample was analyzed in triplicate and quantified by interpolation of the area of the peak. Chromeleon Client software v 6.80 was used to process the raw chromatograms. A data table with the concentrations of the analytes for each sample was finally obtained.
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8

Measuring Intracellular Potassium Levels

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Immediately following UVB exposure, the HBSS was aspirated and the cells were incubated in KSFM for 20 min. Following incubation, the cells were washed twice with a 280 mM sucrose solution to remove extracellular ions. The cells were lysed by adding 500 µL of deionized water prior to placement in a –80 °C freezer for 5 min. After thawing, the lysate was centrifuged to pellet the cellular debris. The supernatant was transferred to an Amicon Ultra-0.5 Centrifugal Filter Device and centrifuged to remove proteins and cellular debris.
The filtered supernatant was analyzed for cation concentration on a Dionex DX500 ion chromatograph with a Dionex CS-12 cation column and an ED50 electrochemical detector (Dionex, Sunnyvale, CA). The eluent was 11 mM H2SO4 in deionized water. K+ concentrations in the samples were calculated using a cation standard curve and PeakNet software. A Bio-Rad protein assay (Bio-Rad, Hercules, CA) was used to express ion concentration as µg K+/mg protein.
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9

Quantitative Pectin Sugar Analysis

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High performance anion exchange chromatography (HPAEC) coupled to pulsed amperometric detection (PAD) was applied to quantify the content of the neutral sugars fucose, rhamnose, arabinose, galactose, glucose, xylose and mannose in the pectin samples.
First, the pectin samples were hydrolyzed in 4 M trifluoroacetic acid at 110 °C for 1.5 h and immediately hereafter cooled in an ice bath. Subsequently, the remaining TFA was neutralized by consecutively drying the samples under N2 at 45 °C, washing the samples with 1 M ammonium hydroxide and finally drying the samples again under N2 at 45 °C (De Roeck, Sila, Duvetter, Van Loey, & Hendrickx, 2008; (link)Stolle-Smits, Beekhuizen, Recourt, Voragen, & Van Dijk, 1997) (link). Hydrolyzed samples were redissolved in ultrapure water and filtered (Chromafil® A-45/25, 0.45 μm pore size, Macherey-Nagel, Düren, Germany) before analysis. The hydrolysis was carried out in duplicate.
The HPAEC-PAD analysis was performed exactly as described in Neckebroeck et al. (2020) (link) using a Dionex ICS-6000 system equipped with a Dionex ICS-6000 Single Pump, a CarboPac™ PA20 column (150 x 3 mm) protected by a CarboPac™ PA20 guard column ( 30x 3 mm) and an ED50 electrochemical detector (Dionex, Sunnyvale, CA, USA).
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10

Quantification of Neutral Sugars in Polysaccharides

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Quantification of the neutral sugars (fucose, rhamnose, arabinose, galactose, glucose, xylose and mannose) in all polysaccharide fractions was performed via high-performance anion exchange chromatography according to Houben et al. (2011) after hydrolysis of the samples with trifluoroacetic acid. A Dionex Bio-LC system (DX600) equipped with a GS50 gradient pump, a CarboPac™ PA20 column (150 x 3 mm, pH range = 0-14), a CarboPac™ PA20 guard column (30 x 3 mm) and an ED50 electrochemical detector (Dionex, Sunnyvale, USA) was used. The detector was equipped with a reference pH electrode (Ag/AgCl) and a gold electrode and was used in the PAD mode, performing a quadruple potential waveform. Elution of the samples was performed with 4 mmol/l NaOH at 30 °C.
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