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4 protocols using sc 374015

1

Protein Extraction and Western Blot Analysis in GBM

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The GBM tissues or GBM cells were added with RIPA buffer (Beyotime, Shanghai, China) containing protease inhibitors. The concentration of aboveextracted proteins was assessed with a BCA assay kit (Abcam, Cambridge, UK). The equal amount of protein samples (30 μg) was separated by 10% SDS‐PAGE and then transferred into the PVDF membranes (Invitrogen). The primary antibodies including anti‐YTHDF2 (ab220163, Abcam), anti‐EPHB3 (ab133742, Abcam), anti‐TNFAIP3 (ab92324, Abcam), anti‐pAkt (Ser473, #3787, Cell Signaling technology, Bossdun, USA), anti‐Akt (#2938, Cell Signaling), anti‐p65 (ab32536, Abcam), anti‐LaminB (sc‐374015, Santa Cruz Biotechnology, CA, USA) and β‐actin (ab8227, Abcam) were incubated with the PVDF membranes for overnight at 4°C. The samples were next incubated with the goat anti‐rabbit IgG (ab205718, Abcam) at 37°C for 2 h at room temperature.
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2

ChIP Assays of Histone Marks

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Native ChIP assays were performed as described previously (16 (link)). Mouse monoclonal antibody against H3K9me3 (2F3), H3K9me2 (6D11), H3K27me3 (1E7), lamin A/C (3A6-4C11, eBioscience) and lamin B1 (B-10, sc-374015, Santa Cruz) were used.
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3

Nrf2 Nuclear Fractionation from BMDMs

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Nuclear fractions from BMDMs (106 cells/well) were prepared using the NE-PER nuclear and cytoplasmic extraction kit (78833; Thermo Fisher Scientific) according to the manufacturer’s instructions. Samples were subjected to SDS-PAGE and analyzed by immunoblotting with antibodies against Nrf2, Lamin B (sc-374015; Santa Cruz), and GAPDH (sc-47724; Santa Cruz).
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4

SDS-PAGE and Western Blot Analysis

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Proteins were denatured in XT sample buffer (cat. No. 1610791; Bio-Rad) and XT reducing agent (cat. No. 1610792; Bio-Rad), heated at 99°C for 10 min, and centrifuged for 5 min at 16,000g (room temperature). 25 μg of each protein mixture was separated by SDS–PAGE (polyacrylamide gel electrophoresis) on a Criterion XT 4–12% Bis-Tris gel (cat. No. 3450124; Bio-Rad Laboratories). Proteins were transferred to a PVDF membrane (cat. No. IPFL00010; Merck Millipore) after which the membrane was blocked using Odyssey blocking buffer (PBS) (cat. No. 927-4000; LI-COR) diluted once with TBS-T (TBS supplemented with 0.1% Tween-20). Immunoblots were incubated overnight with primary antibodies against GAPDH (ab8245; Abcam), HSP60 (sc-13115; Santa Cruz), lamin B (sc-374015; Santa Cruz), ribophorin I (sc-12164; Santa Cruz), or γ-tubulin (MA1-850; Thermo Fisher Scientific) in Odyssey blocking buffer (PBS) diluted once with TBS-T. Blots were washed four times with TBS-T and incubated with fluorescently labeled secondary antibodies (IRDye 800CW Goat Anti-Mouse IgG polyclonal 0.5 mg from cat. No 926-32210; LI-COR and IRDye 800CW Donkey Anti-Goat IgG polyclonal 0.5 mg from cat. No. 926-32214; LI-COR) in Odyssey blocking buffer diluted once with TBS-T for 1 h. After three washes with TBS-T and an additional wash in TBS, immunoblots were imaged using the Odyssey infrared imaging system (LI-COR).
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