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19 protocols using foetal calf serum

1

Culturing Glioma Cell Lines

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BT4Ca (Institute of Cell Biology, Department of Cancer Research, University of Essen Medical School, Germany), C6, F98 and RG-2 cells (Uniklinikum Erlangen, Neuro-oncological Research Laboratory) were cultured in tissue culture dishes (Sarstedt AG & Co, Nümbrecht, Germany) in Dulbecco’s modified Eagle’s medium (DMEM, FG 0445, Biochrom GmbH, Berlin, Germany), supplemented with 10% heat-inactivated foetal calf serum (Biochrom GmbH), 1 mg/ml penicillin and 0.1 mg/ml streptomycin (Biochrom GmbH) and 1 x non-essential amino acids (Biochrom GmbH). Cells were kept in an incubator at 37 °C with 5% CO2 and split once to twice a week at 80–90% confluence.
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2

IPEC-J2 Cell Culture Protocol

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IPEC-J2 cells (ACC 701) obtained from the DSMZ (German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany) and stored at our institute, were grown in plastic flasks (Greiner Bio-One International GmbH, Kremsmünster, Austria) at 37 °C in an atmosphere of 5% CO2, and maintained in Dulbecco’s MEM/Ham’s F-12 (DMEM) (Biochrom GmbH, Berlin, Germany) supplemented with 5% foetal calf serum, 100 units penicillin/mL and 100 mg streptomycin/mL (Biochrom GmbH, Berlin, Germany), as previously described [18 (link)]. The cells from passage 43 to 62 were used for the experiments. They were seeded to a density of 5 × 105 cells/well except for IF, which was 105 cells/well. IPEC-J2 cells were maintained in the cell culture plates during 7 days (except for IF, 5 days) at 37 °C with 5% CO2 changing to a fresh medium every second day, until they reached confluence, using the value of the transepithelial electrical resistance (TEER) as an indicator [19 (link)]. Once confluence was achieved, the cells were subjected to the experiments. All experiments involving IPEC-J2 cells were determined in three independent experiments and each assay was performed in triplicate.
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3

Isolation of Peripheral Blood Mononuclear Cells

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Twenty mL blood containing 75 units per mL sodium-heparin (SIGMA Taufkirchen, Germany) was layered over 20 mL lymphocyte separation medium (PAA, Pasching, Austria) and centrifuged at 1500 × g for 30 min at RT. The PBMC were removed, washed three times with Hank’s buffer without calcium and magnesium, re-suspended in RPMI 1640 medium with glutamine, 10% foetal calf serum (FCS), 10 mM HEPES and 1% Penicillin/Streptomycin (all Biochrom, Berlin, Germany) and adjusted to 2 x 106 PBMC per mL.
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4

Murine Peritoneal Cavity Cell Isolation

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Murine peritoneal cavity cells (PerC) were obtained by peritoneal lavage. Peritoneal lavage was performed by intraperitoneal injection of 10 mL ice-cold PBS supplemented with either 2% foetal calf serum (Biochrom, Berlin, Germany) for RNA isolation or 0.5% fatty-acid-free bovine serum albumin (BSA, Sigma-Aldrich, St. Louis, MO, USA) for cell culture experiments involving later use of spinghosine-1-phosphate (S1P). Absolute cell numbers were determined using BD Trucount tubes (BD Biosciences, Becton Dickinson, Franklin Lakes, NJ, USA).
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5

Dual Immunofluorescence Profiling of Tumor Markers

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Double immunofluorescence stainings were carried out manually on selected tumour specimens using antibodies against Sox9 and β-catenin, Olig2 or GFAP (monoclonal mouse anti GFAP; 1:500; clone 6F2; Dako; Glostrup, Denmark) as well as Sox2 and Olig2 or GFAP. After dewaxing the slides, antigen retrieval by microwave pre-treatment was performed in citrate-buffer at pH 6. To prevent unspecific antibody binding, the slides then were incubated for two hours with a blocking solution containing PBS with foetal calf serum (5%; Biochrom AG; Berlin, Germany), goat serum (3%; Millipore; Temecula, CA, USA) and Triton ×100 (0,1%; Sigma-Aldrich; Steinheim, Germany). Primary antibodies were diluted in the blocking solution and incubated overnight at 4 °C. Carbocyanine 2 (Cy2) goat anti-mouse or goat anti-rabbit (1:100; green; Dianova; Hamburg, Germany) and Cy-3 goat anti-rabbit or goat anti-mouse secondary antibodies (1:100; red; Dianova; Hamburg, Germany) served as fluorescent markers, while cell nuclei were counterstained with Hoechst 33342 (Sigma Aldrich; Steinheim, Germany) at a concentration of 500 ng/ml for 5 min at room temperature. Slides were analysed using an Olympus BX-51 fluorescent microscope (Olympus; Hamburg, Germany) equipped with an F-View II CCD camera (Soft imaging systems; Stuttgart, Germany).
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6

Isolation and Culture of Human PBMCs

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PBMC were isolated from whole blood obtained from healthy donors, which confirmed that their donated blood might be used for scientific purposes in case, when it was not selected for transfusion. Separation of blood cells was performed by density centrifugation (Lymphoprep, Nycomed Pharma AS, Oslo, Norway) as described in more detail earlier (Jenny et al., 2011 (link)). After isolation, PBMC were washed three times in phosphate buffered saline containing 1 μmol/L ethylenediamine diacetate (EDTA). Cells were cultivated in RPMI 1640 supplemented with 10% heat-inactivated foetal calf serum (Biochrom, Berlin, Germany), 2 mmol/L l-glutamine (Serva, Heidelberg, Germany) and 50 μg/ml gentamicin (Bio-Whittaker, Walkersville, MD) at 37 °C in a humidified atmosphere containing 5% CO2.
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7

Mosquito Virus Isolation Protocol

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Species-identified and pooled mosquitoes, with up to 50 individuals per pool, were transferred into Lysing Matrix D tubes (Peqlab, Erlangen, Germany) containing 1 ml of M199 tissue culture medium, antibiotics, antimycotics solution (ABAM, Invitrogen), and 2% foetal calf serum. The mosquito-fluid mixture was homogenised by two rounds of reciprocation at 5 m/sec for 15 seconds with cooling on ice water between the rounds (FastPrep FP120, BIO 101, Q-BIOgene). The homogenate was pressed through a 45 μm filter (Millipore), before additional 1 mL M199 was pressed through the filter, and 0.2 mL of the filtrate was inoculated into one well of a 6-well plate with confluent Vero B4 cells (LGC Standard, Wesel, Germany). Cells were provided 3 mL M199 with 2% foetal calf serum (Biochrom AG, Berlin, Germany) and incubated at 37°C in 5% CO2. Cell cultures were inspected daily, for at least one week, and from wells with observed cytopathogenic effects 0.5 mL of culture supernatant was inoculated into a 25 cm2 flask with Vero cells for confirmation of virus-induced cytopathogenic activity.
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8

Cultivation and Infection of Host Cells by Waddlia chondrophila

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Human lung carcinoma cell line A549 (ATCC CCL-185), Vero cells derived from kidney epithelial cells of the African Green Monkey (ATCC CCL-81) and the human endometrial adenocarcinoma Ishikawa cell line were cultivated as described in Kebbi-Beghdadi, Cisse and Greub (2011) . HEp-2 cells (ATCC CCL-23) were routinely maintained in high glucose Dulbecco's modified minimal essential medium (DMEM; Gibco, Life Technologies, Zug, Switzerland) supplemented with 10% foetal calf serum (Biochrom AG, Berlin, Germany), 1% non-essential amino acids and 1% vitamins (Gibco, Life Technologies). Waddlia chondrophila strain ATCC VR-1470 was grown at 32 • C within Acanthamoeba castellanii strain ATCC 30010 in 25 or 75 cm 2 cell culture flasks (Corning, New York, USA) with peptone-yeast extract-glucose broth (Jacquier et al. 2013) . EBs were purified as described elsewhere (Greub and Raoult 2002) . For infection of epithelial cells, bacteria were recovered from a 4 day-old amoebal co-culture and filtered through a 5-μm filter (Millipore, Carrigtwohill, Ireland) to eliminate trophozoites and cysts.
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9

Calu-3 Cell Culture for Lung Research

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The human lung adenocarcinoma epithelial Calu-3 cells (AddexBio, San Diego, CA, USA) were cultured in Dulbecco's MEM/Ham's F-12 medium (Biochrom, Berlin, Germany) supplemented with 10% foetal calf serum (Biochrom, Berlin, Germany), 1 mg/ml penicillin, and 0.1 mg/ml streptomycin (Biochrom, Berlin, Germany). The cells were maintained in a cell culture incubator in a humidified atmosphere with 5% CO 2 at 37°C. The cell culture medium was renewed every three days. Cells up to passage 35 were used for experiments.
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10

Culturing Aedes, Spodoptera, and Acanthamoeba Cell Lines

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Aedes albopictus clone C6/36 larva cells (ATCC ® CRL-1660 ™ ) and Spodoptera frugiperda ovarian epithelial cells (Sf9) (ATCC ® CRL-1711 ™ ) were routinely maintained respectively at 28°C and 5%CO 2 in Dulbecco's modified essential medium (DMEM; Gibco Invitrogen, Basel, Switzerland) supplemented with 10% foetal calf serum (Biochrom, Berlin, Germany) or at 27°C in Grace insect medium (GIM; Gibco Invitrogen, Basel, Switzerland) supplemented with 10% foetal calf serum.
W. chondrophila strain WSU 86-1044 (ATCC VR-1470), E. lausannensis strain CRIB 30 and P. acanthamoebae strain Hall's coccus were grown at 32°C within Acanthamoeba castellanii strain ATCC 30010, as described in [19] .
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