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8 protocols using ab252833

1

Antibody-based Analysis of Cellular Stress Pathways

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Glyceraldehyde 3-phosphate dehydrogenase (60004-1-Ig) and horseradish peroxidase-conjugated secondary antibodies (SA00001-1 and SA00001-2) were purchased from Proteintech (Wuhan, China). Antibodies against Lamp-2a (ab125068), HSP90 (ab32568), GPX4 (ab252833), HSC70(ab51052), and 4-HNE (ab46545) were obtained from Abcam (Cambridge, UK). NVP-AUY922 and ferrostatin-1 (Fer-1) were purchased from Selleck Chemicals (Houston, TX, USA).
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2

Western Blot Analysis of Cellular Proteins

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Cells were solubilized in RIPA lysis buffer (P0013B, Beyotime Biotechnology, Shanghai, China), and the supernatant was collected after centrifugation at 12,000 rpm for 20 min. Total protein concentration was detected by BCA assay (P0009, Beyotime Biotechnology, Shanghai, China). Proteins were then separated using 12% SDS-PAGE (P0012A, Beyotime Biotechnology, Shanghai, China), and transferred onto polyvinylidene fluoride membranes (PVDF, 88585, ThermoFisher Scientific, California, USA). Upon completion of blocking step in 5% skimmed milk for 1 h, the membranes were incubated overnight at 4 °C with primary antibodies Fancd2 (1:1000, ab108928; Abcam, Cambridge, UK), solute farrier family 7 member 11 (SLC7A11, 1:1000, ab175186; Abcam, Cambridge, UK), and glutathione peroxidase 4 (GPX4, 1:1000, ab252833; Abcam, Cambridge, UK). On the next day, the membranes were incubated with HRP-conjugated secondary antibodies (1:5000, ab205719; Abcam, Cambridge, UK) for 2 h. After that, the protein bands were visualized using the ECL Western blotting Kit (32109, ThermoFisher Scientific, California, USA). Finally, the relative expression of proteins was calculated using GAPDH as an internal reference.
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3

Investigating Protein Expression in Liver Cells

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Total protein from L-02, SMMC7721, or HepG2 cells was extracted using a protein extraction kit (Solarbio, China). The protein concentration was quantified with the Bradford approach. Protein samples (50 µg) were separated via denaturing sodium dodecyl sulfate-polyacrylamide gel electrophoresis, followed by transference onto polyvinylidene fluoride membranes. Membranes were blocked by 5% skim milk then incubated with primary antibodies targeting NUDCD1 (1/5,000; ab126902; Abcam, USA), GAPDH (1/5,000; ab199553), GPX4 (1/2,000; ab252833), and ferritin heavy chain 1 (FTH1) (1/2,000; ab75972), followed by a secondary antibody. Protein bands were developed with an enhanced chemiluminescence reagent.
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4

Antioxidant Pathway Analysis in Spinal Cord Injury

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The injured spinal cord was harvested and digested, and the tissue lysate protein concentration was determined using a bicinchoninic acid (BCA) protein quantitation kit (Thermo Scientific). After conventional electrophoretic separation, membrane transfer, and blocking, primary antibodies against Glutathione Peroxidase 4 (GPX4) (ab252833, abcam), HO-1 (ab305290, abcam), Nrf2 (ab92946, abcam) and secondary antibodies were sequentially applied. Pierce ECL Plus Western Blotting Substrate was indicated to assess the fluorescence intensity, and ImageJ software was used for quantitative identification.
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5

Western Blot Analysis of Oxidative Stress Markers

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Protein samples from RAW264.7 macrophages or lung tissues were washed with PBS, followed by the lysis on ice in lysis buffer containing phosphatase inhibitors and protease inhibitors. Next, the samples were centrifuged (12,000 × g) at 4°C for 15 min. Equal amounts of protein were separated on SDS-PAGE gel, which were then transferred onto polyvinylidene difluoride membranes. After that, 5% nonfat milk was used to block the membranes for 90 min at room temperature, followed by the incubation with primary antibodies at 4°C overnight. Then, the membranes were incubated with peroxidase-conjugated secondary antibodies at room temperature for 60 min. At last, the grey value of these protein bands was scanned and quantified using Image Lab software (BioRad, USA). The primary antibodies as well as their dilution ratio are displayed as follows: SOD1 (#ab183881, Abcam, 1 : 1000), SOD2 (#ab68155, Abcam, 1 : 1000), GPX4 (#ab252833, Abcam, 1 : 500), GAPDH (#ab8245, Abcam, 1 : 1000), phosphorylated-AKT (p-AKT) (#ab38449, Abcam, 1 : 500), AKT (#ab18785, Abcam, 1 : 500), p-Foxo1 (#ab259337, Abcam, 1 : 500), and Foxo1(#ab179450, Abcam, 1 : 500). The relative protein levels of genes were normalized with the level of GAPDH in the same group.
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6

Ischemic Penumbra Protein Analysis

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The ischemic penumbra of rat brain tissues (n = 6) was collected for Western blot analysis as previously described (Liu et al., 2020 (link)). The following primary antibodies were used: anti‐beta‐Actin (Abcam, ab8226, 1:1000), anti‐GPX4 (Abcam, ab252833, 1:1000), anti‐FTH1 (Abcam, ab183781, 1:1000), anti‐TF (Abcam, ab82411, 1:1000), anti‐TF receptor (Abcam, ab269513, 1:1000), anti‐HO1 (Abcam, ab68477, 1:1000), anti‐ACSL‐4 (Abcam, ab155282, 1:1000), and anti‐xCT (Invitrogen, PA1‐16893, 1:1000).
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7

Skeletal Muscle Tissue Proteomics

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Frozen skeletal muscle tissue or cultured SCs were homogenized on ice in RIPA buffer containing a protease inhibitor cocktail and phosphatase inhibitors (including 50 nM okadaic acid, 5 mM sodium pyrophosphate, and 50 mM NaF; Sigma-Aldrich). Protein levels of CHI3L1 and ferroptosis marker proteins, including Acyl-CoA synthetase long-chain family member 4 (ACSL4) (Abcam, ab155282), ferritin Heavy Chain 1 (FTH1) (Abcam, ab183781), glutathione peroxidase 4 (GPX4) (Abcam, ab252833), and Cyclooxygenases 2 (COX2) (Abcam, ab179800), were assessed in skeletal muscle tissue using quantitative Western blot analysis, following the protocols from our previous studies [15 (link)]. To investigate the impact of CHI3L1 on SCs injury, protein levels of interleukin-1β (IL-1β, Abcam, ab254360), phosphorylated and total protein kinase B (AKT, Cell signaling technology, #9272; p-AKT, Cell signaling technology, #4060) were examined in CHI3L1-siRNA transfected SCs following LPS treatment. Western blots were visualized using the ECL method (Thermo Scientific), and band intensities were quantified using Image J software. The protein level of each sample was calculated as the ratio of the target protein to GAPDH.
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8

Protein Expression Analysis of Heart Tissues

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The total proteins were extracted from heart tissues, or cells by using ice-cold RIPA lysis buffer (Beyotime, China). A total of 30 μg proteins were separated by SDS-polyacrylamide gel (SDS-PAGE), shifted to polyvinylidene difluoride (PVDF) membranes (Millipore, Germany), and blocked in 5% non-fat milk, followed by incubation with specific primary anti-collagen 1 (ab254113, Abcam, United States, 1:1,000), anti-α-SMA (ab40854, Abcam, United States, 1:1,000), anti-GPX4 (ab252833, Abcam, United States, 1:1,000), anti-SLC7A11 (ab175186, Abcam, United States, 1:1,000) antibodies at 4°C overnight. Next day, the protein bands were incubated with HRP conjugated secondary anti-mouse or anti-rabbit antibodies (ab175775/ab288151, Abcam, United States, 1:1,000) at room temperature for 1 h. The bands were then visualized by using ECL (Thermo) on a gel image system (Bio-Rad, United States). All antibodies were purchased from Abcam.
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