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24 protocols using accutase cell detachment solution

1

Isolation and Polarization of Human Monocyte-Derived Macrophages

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Whole blood from apheresis was obtained from healthy donors at Boston Children’s Hospital’s (BCH) Plasma Donation Center. Because donor samples are completely de-identified at BCH prior to handling by research personnel and use in the laboratory, there is no IRB associated with the protocol. PBMCs were isolated via Ficoll gradient (Lymphoprep, StemCell 07801). CD14+ monocytes were then isolated from PBMCs using the MojoSort Human CD14 Selection Kit (Biolegend 480025) according to manufacturer protocol and plated at 5 × 106 cells per well in a 6-well plate in RPMI supplemented with 10% (v/v) FBS, penicillin/streptomycin, and 50 ng/ml M-CSF. On days 2, 4, and 6 after plating, culture media was refreshed. On day 6, cells were lifted from the plate using cold PBS and Accutase cell detachment solution (StemCell 07920) and replated at 2.5 × 104 cells/well in a 96 well plate.
On day 7, cells were given fresh media and treated with either nothing, 100 ng/ml LPS (Sigma–Aldrich, L2654), 20 ng/ml IL-4 (Peprotech, 200-04), or 100 μg/ml PAS polymers or β-glucans. After 24 h of incubation, cells were lifted from the plate with cold PBS and Accutase cell detachment solution and stained for CD68 (StemCell 60105FI) and either CD80 (Biolegend 333611), CD163 (Biolegend 305221), or CD206 (R&D Systems FAB25342P). Cells were then analyzed via flow cytometry (Attune, ThermoFisher Scientific).
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2

Quantification of Cellular Superoxide

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Cellular superoxide anions were detected and quantified using dihydroethidium (DHE, D1168; Thermo Fisher Scientific) as a previously reported procedure (Wang et al., 2019 (link)). Briefly, neurospheres were dissociated into single cells with Accutase™ cell detachment solution (No. 07920; StemCell Technologies). After washing three times with PBS, the dissociated single cells were pellet and resuspended with prewarmed PBS containing 10 μM DHE. After incubating for 15 min in the dark, cells were precipitated and washed three times with PBS. Lastly, an equal number of cells (1 × 105 cells/well) was added to the 96-well plate. The fluorescence intensity was measured using a Varioskan LUX multimode microplate reader (Thermo Fisher Scientific) with excitation and emission at 510 and 600 nm, respectively.
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3

Characterization of M1 and M2 Macrophage Subsets

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Macrophages were collected by Accutase cell detachment solution (STEMCEll Technology, Vancouver, Canada). M1 and M2 phenotypes were detected by flow cytometry. In this process, cells were stained with fluorescence-conjugated monoclonal antibodies including CD14-PE-Cy7, CD68-PE, CD80-BV510, HLA-DR-Percp/Cy5.5, CD163-BV421, and CD206-APC, together with LIVE/DEAD Fixable Dead Cell APC/Cy7 (all from Thermo Fisher Scientific) according to the manufacturer’s protocol. For the expression of PFKFB3 in different macrophage subtypes, the primary rabbit anti-human PFKFB3 and goat anti-rabbit secondary antibody conjugated with Alexa Fluor 488 (Jackson Laboratory, Bar Harbor, ME, USA) were employed to perform the intracellular staining with the fixation/permeabilization solution (BD Bioscience) according to the protocol of manufacture. The fluorescence was detected by the BD LSRFortessa flow cytometer (BD Bioscience), and the data were analyzed by FlowJo X (BD Bioscience).
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4

Decellularization and Recellularization of Tracheal Grafts

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As described in our previous publication [5 (link)], female WT tracheas were processed as grafts for orthotopic tracheal transplantation. In brief, tracheas were trimmed to 5 cm in length and attached to the bioreactor. A sequential decellularization protocol of 1X DPBS, 0.25% w/v sodium dodecyl sulfate (SDS) in deionized water (diH2O), and then 1% v/v Triton X-100 at 37 °C maintained cartilage viability and de-epithelialized the lumen. Tracheas were thoroughly washed with 1X DPBS for 48 h at 4 °C prior to recellularization.
Processed tracheas were then trimmed to 3 cm and reattached to the bioreactor for recellularization. Tomato fluorescent ferret BCs were expanded to 80–90% confluence and collected with Accutase cell detachment solution (StemCell Technologies, Vancouver, BC, Canada, Cat#07920). The cell pellet was resuspended in 350 µL of Pneumacult Ex-Plus and injected as a bolus into the lumen of the trachea. The recellularization circuit was established, and expansion media was perfused for two days with regular graft washing.
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5

Isolation and Expansion of Mouse NPCs

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NPCs were isolated from E14.5 mouse forebrains as previously described (90 ). Briefly, subventricular zones were dissected and the meninges removed before being digested in Accutase cell detachment solution (STEMCELL Technologies; 100 μL, 30 min at 37 °C) followed by mechanical dissociation by trituration with a Pasteur pipette. Single cells were resuspended at 40,000 cells per mL in NPC proliferation medium (EmbryoMax with L-Glutamine, without Hepes Dulbecco’s Modified Eagle Medium/F12 [Sigma-Aldrich, Merck]) supplemented with recombinant fibroblast growth factor-2 (20 ng ⋅ ml−1, Invitrogen), human epidermal growth factor (10 ng ⋅ mL−1) B-27, and N-2 (1%, 100×) (all growth factors are from Gibco, Thermo Fisher Scientific). Neurosphere cultures were passaged upon growth to a diameter of 100 to 200 μm (typically every 3 to 4 d) and single cell NPCs from generations one to three used for experiments at the time of passage.
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6

Transdifferentiation of human fibroblasts

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NHF-1-hTERT human fibroblasts were transdifferentiated, as described previously (17 (link)). Briefly, 1 × 105 NHF-1-hTERT cells were seeded in six-well plate supplemented with 10% FBS DMEM media overnight. The next day (day 0), cells were transduced with LV-GFP-TRAIL, LV-mCherry-FLuc, or LV-GFP-NLuc for 24 hours in 2% FBS DMEM media supplemented with polybrene (8 μg/ml) (Thermo Fisher Scientific). The cells were transduced again (day 1) with a cocktail of LV-SOX2 and LV-rtTA in 2% FBS DMEM media supplemented with polybrene (8 μg/ml) for 24 hours. Before use, 1 × 106 cells were seeded in T-175 flask with regular 10% FBS DMEM media overnight. Starting from day 2, cells were cultured in STEMdiff neural induction media (STEMCELL Technologies) with doxycycline (2 μg/ml; Sigma-Aldrich), and media was replenished every other day. Cells were detached with Accutase cell detachment solution (STEMCELL Technologies) for use on day 6.
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7

Protocol for Neural Crest Induction from Human Pluripotent Stem Cells

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For neural crest induction, human ESC/iPSC colonies were treated with Accutase cell detachment solution (STEMCELL Technologies) and re-suspended in induction medium plus 3 μM CHIR 99021 and 10 μM ROCK inhibitor, Y-27632 (Tocris Bioscience) plated at the 20,000 cells/cm2 density on Matrigel-coated surfaces. Induction medium contained DMEM/F12 medium supplemented with 2% B27 supplement (Gibco), 1X Glutamax (Gibco) and 0.5% bovine serum albumin (wt/vol) (Sigma-Aldrich). CHIR and ROCK inhibitor Y-27632 were added for the first two days, induction media without CHIR and ROCK inhibitor was used for next 3-days. For non-neural ectodermal differentiation, basal media with 2% B27, 1x Glutamax, and 0.5% BSA was used for 5 days (Leung et al., 2016 (link)). For neuroectodermal differentiation, DMEM/F12 medium with 2% B27 supplement, 1 × Glutamax, 100 nM LDN-193189 (Tocris) and 10 μM SB431542 (Tocris) was used for 5 days (Leung et al., 2019 (link)). For mesoderm induction, DMEM/F12 supplemented with 2.5 ng/ml FGF basic (Tocris Bioscience) with 3 μM CHIR was used for 3 days, while for endoderm induction DMEM/F12 supplemented with 1% FBS and 10 ng/ml Activin A (Tocris Bioscience) with 3 μM CHIR was used for first day and without CHIR next two days. Plating density for all differentiation were maintained at 20,000 cells/cm2. Small molecules and medium were replenished daily.
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8

Maintenance and Characterization of iPSCs

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Cultured iPSCs were transferred onto Matrigel-coated 6-well plates containing DMEM/GlutaMAX (Life Technologies) supplemented with 10% fetal bovine serum and a Rho kinase inhibitor, Y-27632 (10 mM prepared in 100 μl of Dulbecco’s phosphate-buffered saline) (Sigma-Aldrich). After the cells adhered, the medium was changed to chemically defined Essential 8 medium (Life Technologies). The medium was changed daily, and cells were passaged every 5–6 days using Accutase Cell Detachment Solution (STEMCELL Technologies, Vancouver, Canada)35 (link).
The iPSC clones were fixed with 4% paraformaldehyde and immunostaining was performed using the following primary antibodies: Sox2, Tra-1–60, SSEA-4 and Oct4 and Alexa Fluor 594-conjugates or 488-conjugated secondary antibody (Life technologies). Alkaline phosphatase live cell staining was also performed (Life Technologies). These factors all stained positively in iPSC clones which were detected by indirect immunofluorescence microscopy (Carl Zeiss, Göttingen, Germany; Supplementary Figure S2D). Cell viability and proliferation after UBC KD were assessed by crystal violet staining assay. Cells were stained with crystal violet (Sigma-Aldrich) at the indicated time points.
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9

Generating Therapeutic iNSCs from NHF-1 Cells

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Therapeutic iNSCs were generated from the following established protocol [21 (link)]: On day 1, 2 × 106 virally infected NHF-1 cells were plated in a T175 tissue culture flask, supplemented with standard cell culture media, and incubated at 37 °C/5%CO2 for 24 h. Post 24-h incubation, the standard cell culture media was removed and replaced with neural induction media containing 2 μ g/mL doxycycline (referred to as transdifferentiation media). The transdifferentiation media was replenished every other day for 5 days. On day 5, cells were harvested using Accutase Cell Detachment Solution (STEMCELL Technologies, Vancouver, BC, Canada) and filtered through a 100 μ m cell strainer.
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10

Cell Surface Expression and Tumor Dissociation Analysis

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For cell surface expression of HLA-A/B/C, cells were plated into 6-well plates at 3 × 105 cells/well. After 24 hrs, cells were detached using Accutase cell detachment solution (STEMCELL no. 07920) and 106 cells stained with 5 μl PE-anti-HLA-A, B, C antibody (BioLegend no. 311405) or PE-IgG2a isotype antibody (BioLegend no. 400211) and analyzed on an LSR Fortessa instrument (BD PharMingen). For 4T1-luc experiments, tumors were dissociated into single cells using the gentleMACS Octo Dissociator with heaters (Miltenyi Biotec) as described in the protocol for the Tumor Dissociation Kit (Miltenyi Biotec no. 130-096-730). Cells were passed through a 70 μm filter to remove clumps and maintain single cell suspensions. Cell surface staining was performed with the indicated antibodies before fixation and permeabilization of cells for intracellular staining. For IFNγ detection, Cell Activation Cocktail (BioLegend no. 423303) was used for stimulation 5 hrs prior to cell surface staining. All antibodies (anti-CD45.2, anti-CD3ε, anti-CD8, anti-CD335, anti-Foxp3, anti-IFNγ, anti-H-2Kd) were purchased from BioLegend. Samples were analyzed using a LSR Fortessa instrument (BD PharMingen) and data analyzed with FlowJo Software (Treestar).
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