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16 protocols using ab16287

1

Immunocytochemistry of Stem Cell Markers

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Cells were cultured on a glass slide and fixed in 4% paraformaldehyde for 15 min. The cells were permeabilized with 0.1% Triton X-100 for 10 min, and non-specific antibody interaction sites were then blocked for 15 min. Next, the cells were incubated at 4 °C overnight with primary antibodies, Nanog (ab109250, Abcam, USA), Oct4 (ab200834, Abcam, USA), SSEA4 (ab16287, Abcam, USA), and TRA-1-81 (ab16288, Abcam, USA), to identify ESCs and follicle stimulating hormone receptor (FSHR, 22665-1-AP, Proteintech, China) to identify granulosa cells. On day 2, the cells were incubated with a secondary antibody in a darkroom for 1 h. Finally, the cell nuclei were labeled with Hoechst 33324 for 1 min. After that, the slides were observed and imaged using a fluorescence microscope (DMI 6000, Leica Micro systems, Buffalo Grove, IL, USA).
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2

Stem Cell Characterization Protocol

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The cells were washed with phosphate buffered saline (PBS) and then fixed with 4% (w/v)
paraformaldehyde (PFA) for 15 min. Alkaline phosphatase (ALP) activity was tested using
Alkaline Phosphatase Kit (Sigma-Aldrich, MO, USA) following the manufacturer’s
instructions. The pink-to-red colored colonies were classified as positive to ALP
activity. To investigate protein expression, the cells were passaged onto a cover slip and
then fixed with 4% (w/v) PFA. The cells were permeabilized if necessary in mixture of 0.1%
Triton X-100, 2% bovine serum albumin (BSA) in PBS and the non-specific binding was
blocked with 2% BSA. The cells were incubated at 4°C with primary antibodies overnight.
The primary antibodies in this study included OCT-3/4 (SC8628, Santa Cruz Biotechnology,
TX, USA , 1:100), SSEA-4 (ab16287, Abcam, Cambridge, UK , 1:50), FLK1 (SC393163, Santa
Cruz Biotechnology, 1:100) and cTnT (troponin T, ab33589, Abcam, 1:100). The samples were
then stained with secondary antibody corresponding to the primary antibodies used. The 4’,
6’-diamidino-2-phenylindole (DAPI) in mounting medium (VECTASHIELD® Mounting
Medium, Vector Laboratories, CA, USA) was used to visualize the nucleus. The negative
control was performed as described above without primary antibody. A fluorescent
microscope (BX51, Olympus) and DP2-BSW software were used for visualization and record the
samples.
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3

Pluripotency Marker Expression in hiPSCs

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Human iPSCs were fixed in 4% PFA at room temperature and then stained with antibodies against the following makers: Oct3/4 (1:500 dilution Abcam #ab27985) and SSEA-4 (1:100 dilution Abcam# ab16287) and AlexFluor-488 conjugated antibodies against human TRA-1-60 (1:100 dilution BD Pharmigen #560173) in 0.1% Triton (Fisher X-100) and and 1% Fetal Bovine Serum (FBS) in PBS. For secondary antibodies goat IgG (1:250 in PBS, Invitrogen #A11055) and mouse IgG (1:250 in PBS, Invitrogen #A11055) were used to detect Oct3/4 and anti-SSEA-4, respectively. Cell nuclei were counterstained with Hoechst 33342 (10 ng/mL of Thermo Scientific #H1399).
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4

Immunocytochemistry of Stem Cell Markers

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Cells were cultured on a glass slide and fixed in 4% paraformaldehyde for 15 min. The cells were permeabilized with 0.1% Triton X-100 for 10 min, and non-specific antibody interaction sites were then blocked for 15 min. Next, the cells were incubated at 4 °C overnight with primary antibodies, Nanog (ab109250, Abcam, USA), Oct4 (ab200834, Abcam, USA), SSEA4 (ab16287, Abcam, USA), and TRA-1-81 (ab16288, Abcam, USA), to identify ESCs and follicle stimulating hormone receptor (FSHR, 22665-1-AP, Proteintech, China) to identify granulosa cells. On day 2, the cells were incubated with a secondary antibody in a darkroom for 1 h. Finally, the cell nuclei were labeled with Hoechst 33324 for 1 min. After that, the slides were observed and imaged using a fluorescence microscope (DMI 6000, Leica Micro systems, Buffalo Grove, IL, USA).
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5

Immunostaining of Pluripotent and Neural Markers

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Cells were fixed in 4% paraformaldehyde for 10–20 min, washed with PBS three times (5 min each), permeabilized with 0.1% triton X-100 for 15 min, incubated in blocking solution (2% BSA) for 1 hour at RT and then in primary antibodies (goat anti-Nanog, Abcam ab77095, 1:500; rabbit anti-Lin28, Abcam ab46020, 1:500; rabbit anti-Oct4, Abcam ab19857, 1:500; mouse anti-SSEA4, Abcam ab16287, 1:200; mouse anti-Nestin, Abcam ab22035, 1:200; rabbit anti-Musashi1, Abcam ab52865, 1:250; rat anti-CTIP2, Abcam ab18465, 1:250; rabbit anti-SATB2, Abcam ab34735, 1:200; chicken anti-MAP2, Abcam ab5392, 1:1000; rabbit anti-FZD9, Origene TA314730, 1:150; chicken anti-EGFP, Abcam ab13970, 1:1000; rabbit anti-Synapsin1, EMD-Millipore AB1543P, 1:500; mouse anti-Vglut1, Synaptic Systems 135311, 1:500; rabbit anti-Homer1, Synaptic Systems 160003, 1:500) overnight at 4°C. The next day, cells were washed with PBS three times (5 min each), incubated with secondary antibodies (Alexa Fluor 488, 555 and 647, Life Technologies, 1:1000) for 1 hour at RT, and washed with PBS three times (5 min each). Nuclei were stained using DAPI (1:10,000). Slides or coverslips were mounted using ProLong Gold antifade mountant (Life Technologies).
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6

Immunocytochemical Characterization of 253G1 Cells

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After being seeding on 6-well plates, 253G1 cells seeded onto matrix-coated 6-well plate were washed with PBS and fixed with 4% paraformaldehyde in PBS for 30 min at RT. Then, cells were permeabilized with 0.1% Triton X-100 in PBS at RT for 5 min and blocked with 1% BSA/PBS solution at RT for 30 min. To detect OCT4 marker protein, cells were treated with anti-OCT4 rabbit polyclonal antibody as the primary antibody (ab19857; Abcam) and subsequently with Alexa Fluor488-conjugated anti-rabbit IgG antibody (ab150077; Abcam). To detect SSEA4, cells were treated with anti-SSEA4 mouse monoclonal antibody (ab16287; Abcam) as the primary antibody and subsequently with Alexa Fluor647-conjugated antimouse IgG antibody (ab150115; Abcam). The nuclei were stained with 4′,6-diamidino-2-phenylindole (Dojindo) in 1% BSA/PBS.
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7

Characterization of Pluripotent Stem Cells

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ESCs over 85% confluence were passaged as clumps by utilizing Dissociation Buffer (Cat# RP01007; Nuwacell, Hefei, Anhui, China). The relevant markers, including stage-specific embryonic antigen-4 (SSEA4), TRA-1-60, and TRA-1-81, were detected by flow cytometry. The cells were filtered through a 40-µm cell strainer and centrifuged at 500 g for 5 min at 4°C, with the supernatant removed. Later, cells were resuspended in fluorescence-activated cell sorting (FACS) buffer (cat. no. 00–4222; eBioscience, San Diego, CA, USA) at 2 × 106/mL to prepare single-cell suspension. The cells were incubated with antibodies anti-SSEA4 (1:1000, ab16287, Abcam, Cambridge, UK), anti-TRA-1-60 (10 µg/mL, MAB4360, Merck, Kenilworth, NJ, USA), and anti-TRA-1-81 (0.5 µg/mL, gtx48034, GeneTex, Irvine, CA, USA) on ice for 30 min, respectively. Subsequently, cells were reacted with secondary antibody goat anti-mouse immunoglobulin G (IgG) Alexa Fluor® 488 (1:2000, ab150113, Abcam) for 30 min. The mouse IgG (1 µg/mL, ab170190, Abcam) served as the isotype control. After two washes, cells were resuspended in phosphate-buffered saline (PBS) with 2% FBS and cells with the positive expression of SSEA4, TRA-1-60 and TRA-1-81 were analyzed by a flow cytometer (FACSAria III; BD Biosciences, San Jose, CA, USA). The results were analyzed using FlowJo (version 10.0.7r2; FlowJo LLC, Ashland, OR, USA). [42 ].
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8

Immunofluorescence Staining of Pdot-labeled MSCs

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Immunofluorescence staining of the Pdot-labeled MSCs was performed in accordance of manufacturers' instructions. In brief, cells were fixed with 4% PFA for 20 mins at room temperature, permeabilized by using 0.5% TtitonX-100 for 20 mins at room temperature. After blocking with 5% BSA for 1 h at 37 °C, cells were incubated with primary antibodies including OCT-4 (ab19857, Abcam), NANOG (ab109250, Abcam), and SSEA-4 (ab16287, Abcam) at 4 °C overnight, followed by incubation with Alexa Fluor® 488-labeled secondary antibodies for 2 hours at room temperature in dark. Tubulin structure was stained by biotin anti-α-tubulin antibody (627904, Biolegend) and Alexa 488-streptavidin (S11223, Invitrogen).
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9

Immunohistochemical Analysis of Stem Cell Markers

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Biosheets were fixed in a 4% paraformaldehyde phosphate-buffered solution (pH 7.4) (Wako pure chemical; Osaka, Japan), embedded in paraffin, and sectioned at 3 to 5 µm thickness. The sections were subjected to routine hematoxylin and eosin (H&E) staining for nuclear detection and Masson’s trichrome staining for collagen fiber detection.
For immunohistochemical analysis, the deparaffinized sections were heated in Immunosaver solution (FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan) at 90 °C for 1 h for antigen retrieval. Subsequently, the sections were washed in distilled water twice for 10 min and blocked in 1% bovine serum albumin (Wako pure chemicals) in PBS at 24–26 °C for 1 h and incubated with anti-SSEA4 mouse monoclonal antibody (1:100, ab16287; Abcam, Cambridge, UK) and anti-CD105 rabbit polyclonal antibody (1:200, bs-0579R; Bioss Inc., Boston, MA, USA) overnight at 4 °C. After being washed twice with distilled water for 10 min, the sections were incubated with Alexa Fluor 488 rabbit anti-mouse IgG antibody (1:1000, ab169345; Abcam) or Alexa Fluor 594 goat anti-rabbit IgG antibody (1:1000, ab150080; Abcam) at 24–26℃ for 2 h. DAPI (ProLong Gold Antifade Mountant with DAPI; Thermo Fisher Scientific, Inc., Waltham, MA, USA) was used as a nuclear counterstain. The sections were analyzed using fluorescence microscopy (ECLIPSE-Ti; Nikon Corporation, Tokyo, Japan).
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10

Immunocytochemical Characterization of iPSCs and iPSC-CMs

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Colonies of iPSCs and iPSC-CMs were fixed with 4% paraformaldehyde (PFA)/ phosphate-buffered saline (PBS) (FUJIFILM Wako, Osaka, Japan) for 20 min, washed twice with PBS (FUJIFILM Wako), permeabilized with 0.2% Triton X-100 in PBS for 5 min, and blocked with 3% bovine serum albumin (BSA) in Tris-buffered saline containing 0.1% Tween-20 (TBST). The fixed iPSCs were incubated with anti-TRA-1-60 (1:150; GTX48033, GeneTex, LA, USA), anti-SSEA4 (1:150; ab16287, Abcam, Cambridge, UK), and anti-OCT4 (1:150; ab19857, Abcam) antibodies in 1% BSA/TBST for 1 h at room temperature or overnight at 4 °C. Meanwhile, the fixed iPSC-CMs were incubated with anti-α-actinin (1:150; A7732, Sigma-Aldrich, St. Louis, MO, USA) antibodies. The cells were washed thrice with TBST and incubated with rhodamine–phalloidin, 4′-6-diamidino-2-phenylindole (DAPI), and the following secondary antibodies in 1% BSA/TBST for 1 h at room temperature or overnight at 4 °C: Alexa 488-conjugated anti-mouse IgG (1:150; Thermo Fisher Scientific, Waltham, MA, USA), Alexa 488-conjugated anti-mouse IgM (1:150; Thermo Fisher Scientific), or Alexa 488-conjugated anti-rabbit IgG (1:150; Thermo Fisher Scientific). Next, the cells were washed thrice with TBST and analyzed under a BZ-X700 fluorescence microscope (Keyence Corporation, Osaka, Japan).
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