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6 protocols using anti usp14

1

Bortezomib-Induced Apoptosis Pathway

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Chemicals used were: bortezomib (LC Laboratories), Propidium Iodide and N-acetylcysteine (Sigma Aldrich). Primary antibodies used were: anti-Gas236 (link) anti-actin (Sigma/Aldrich) anti-USP137 (link) anti-USP33 (Millipore) anti-AKT (Cell Signaling) anti-UCH-L5 (Abcam), anti-USP1838 (link) anti-HDAC439 (link) anti-MEF2D (BD Bioscience), anti-GRP78, anti-USP14, anti-Cofilin-1, anti-pCofilin-1 (Santa Cruz Biotechnologies).
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2

Western Blot Antibody Panel for Autophagy

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The commercial antibodies used for Western blot analysis include the following: Anti-phospho-Akt (Ser473) (1:1000 dilution; no. 3787), anti-LC3B (1:1000 dilution; no. 2775), anti-USP14 (rabbit, 1:1000 dilution; no. 11931), anti-Atg14L (1:1000 dilution; no. 5504), and anti-Flag (1:1000 dilution; no. 2368) were from Cell Signaling Technology. Anti-Beclin 1 (1:1000 dilution for Western blot [sc-11427]; 1:200 dilution for immunoprecipitation [sc-48341]), anti-Akt (1:1000 dilution; sc-8312), and anti-USP14 (mouse, 1:100 dilution for immunoprecipitation; sc-393872) were from Santa Cruz Biotechnology. Anti-Myc (1:1000 dilution; 16286-1-AP), anti-HA (1:1000 dilution; 51064-2-AP) anti-Rubion (1:1000 dilution; 21444-1-AP), and anti-GAPDH (1:10,000 dilution; 60004-1-Ig) were from Proteintech. Anti-Tubulin (1:10,000 dilution; PM054), anti-UVRAG (1:1000 dilution; PD027), and anti-p62 (1:5000; PM045) were from MBL. Anti-ubiquitin Lys63-specific antibody (1:2000 dilution; no. 2210353) was from Milllipore. Mouse monoclonal anti-Flag (1:500 for immunoprecipitation; F1804), Anti-Myc, and anti-HA affinity gel (E6779) were from Sigma-Aldrich. IU1 (S7134), MK2206 (S1078), E64D (S7379), rapamycin (S1039), and MG132 (S2619) were from Selleckchem.
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3

Molecular Interplay of Ubiquitin Proteases

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bAP15 (11324) was purchased from Cayman Chemical (Ann Arbor, MI). The USP14 inhibitor IU1 (662210) was obtained from EMD Millipore Corporation (Billerica, MA). UCHL5 shRNA plasmid (h) (sc-76797-SH) was purchased from Santa Cruz Biotechnology (Dallas, TX). HA-ubiquitin (Plasmid 18712) was purchased from Addgene (Cambridge, MA).
Antibodies were obtained as follows; anti-β-actin (sc-47778), anti-UCHL5 (sc-271002), anti-USP14 (sc-100630), anti-β-catenin (sc-7963), anti-Vimentin (sc-6260), anti-Ub (sc-166553), and anti-HA-probe (F-7) (sc-7392) (Santa Cruz Biotechnology), anti-E-cadherin (610181), anti-N-cadherin (610920)(BD Bioscience, San Jose, CA), anti-Smad2 (5339), anti-Phospho-Smad2 (3108), anti-Phospho-Smad2 (18338), anti-Smad3 (9523), anti-Phospho-Smad3 (9520), and anti-Smad4 (38454) (Cell Signaling Technology, Danvers, MA).
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4

Protein Expression Analysis in ESCC

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Total protein was extracted from ESCC tissues or cells using radioimmunoprecipitation assay (RIPA) lysis buffer containing a mixture of protease inhibitor. The protein concentration was quantified by the Bradford assay. A total of 50 μg of proteins was separated by 10% SDS–polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes (Amersham, Little Chalfont, UK). After blocking with 5% fat-free milk in TBS [20 mmol/L Tris, 0.15 mol/L NaCl (pH 7.0), 0.1% Tween 20], the membranes were incubated with primary antibodies (anti-USP14, anti-E-cadherin, anti-N-cadherin, anti-β-catenin, anti-cyclin D1, anti-c-Myc, and anti-GAPDH) (Santa Cruz Biotechnology, Santa Cruz, CA, USA) at 4°C overnight. The membranes were then incubated with horseradish peroxidase-conjugated secondary antibody (Santa Cruz Biotechnology) for 1 h at room temperature. Finally, the blots were visualized by enhanced chemiluminescence (ECL) detection system (Amersham). The gray intensity analysis was performed using the Image-Pro Plus 6.0 software (Media Cybernetics Inc., Rockville, MD, USA).
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5

Dissecting TRAIL-induced Apoptosis Signaling

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Sigma Chemical Co. provided honokiol, cycloheximide and MG132 (St. Louis, MO, USA), and R&D system supplied recombinant human recombinant TRAIL and z-VAD-fmk (Minneapolis, MN, USA). Enzo Life Sciences provided lactacystin (Ann Arbor, MI, USA). The primary antibodies were as follows: Cell Signaling Technology supplied anti-PARP, anti-cleaved caspase-3, anti-Bcl-xL, anti-DR5, anti-CHOP, and anti-UCHL1 (Beverly, MA, USA). Sigma Chemical Co. supplied anti-actin (St. Louis, MO, USA). Enzo Life Sciences provided anti-pro-caspase-3 and anti-c-FLIP (San Diego, CA, USA). BD Biosciences provided anti-Bim and anti-XIAP (San Jose, CA, USA). Abcam supplied anti-DR4 (Cambridge, MA, USA). R&D system supplied anti-survivin (Minneapolis, MN, USA). Santa Cruz Biotechnology provided anti-Mcl-1, anti-Bcl-2, anti-cIAP2, anti-ATF4, anti-Ub, anti-Cbl, anti-Itch, anti-USP14, anti-USP33, anti-OTUB1, anti-TRABID, and anti-STAMBPL1 (St. Louis, MO, USA). Bethyl Laboratories Inc provided anti-USP7 and anti-USP8 (Montgomery, TX, USA). Novus Biologicals supplied anti-USP53 (Centennial, CO, USA). Abnova provided anti-USP9X (Taipei City, Taiwan). The siRNAs were as follows: GFP (control) siRNA (Bioneer, Daejeon, Korea), DR5 siRNA (Invitrogen, Carlsbad, CA, USA), and STAMBPL1 siRNA (Santa Cruz Biotechnology, St. Louis, MO, USA). STAMBPL1 plasmid was a gift from Dr. H.C. Kang (Ajou University, Suwon, Korea).
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6

Protein Analysis via Western Blotting and IP

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Western blotting and immunoprecipitation assays were performed as previously described (18) . Primary antibodies used in Western blotting are anti-KIF15 (1:1,000, catalog no. 55407-1-AP; Protein-Tech), anti-AR (1:1,000, catalog no. 06-680; Millipore; RayBiotech catalog no. 130-10083-1000, RRID:AB_11218813), anti-AR-V7 (1:1,000, catalog no. 19672; Cell Signaling Technology), anti-USP14 (1:1,000, catalog no. sc-393872; Santa Cruz Biotechnology), anti-Ubiquitin (1:1,000, catalog no. 3936; Cell Signaling Technology; LifeSpan catalog no. LS-C93201-1000, RRID:AB_10641875), anti-His (1:1,000, catalog no. 12698; Cell Signaling Technology; LifeSpan catalog no. LS-C129774-1000, RRID:AB_10832018), and anti-GAPDH (1:1,000, catalog no. ab181602; Abcam).
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