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5 protocols using pe cy7 conjugated anti ifn γ

1

Multiparametric Flow Cytometry of T-cell Subsets

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The stimulated PBMCs were harvested and stained with allophycocyanin (APC)-conjugated anti-CD4 and (APC-H7)-conjugated anti-CD3, fixed and permeabilized with the permeabilization/fixation solution (eBiosciences, San Diego, USA), followed by staining with PE-conjugated anti-IL-22 (R&D Systems, Minneapolis, MN, USA), FITC-conjugated anti-IL-17 (BD Pharmingen, San Diego, CA, USA), and PE-Cy7-conjugated anti-IFN-γ (BD Pharmingen, San Diego, CA, USA). The frequency of CD4+IFN-γIL17AIL-22+ (Th22), CD4+IFN-γIL17A+IL-22 (Th17), CD4+IFN-γIL17A+IL-22+(Th17/Th22) and CD4+IFN-γ+ (Th1) T cells in the samples was determined by flow cytometry analysis on a BD FACSAria II (Becton Dickinson) using FlowJo 7.6.2 software.
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2

Th1 Cell Immunophenotyping and Cytokine Analysis

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The PBMCs were harvested and stained with allophycocyanin- (APC-) H7 mouse anti-human CD4 and PerCP-Cy™5.5 mouse anti-human CD3 (BD Pharmingen, San Diego, CA, USA) for 30 min. After staining, the cells were fixed and permeabilized using the permeabilization/fixation solution kit (eBioscience, San Diego, USA) for 30 min, followed by staining with PE-Cy7-conjugated anti-IFN-γ (BD Biosciences, San Diego, CA, USA) for 30 min. The frequency of CD3+CD4+IFN-γ+ (Th1) T cells was determined by flow cytometry analysis using the BD FACSAria II (Becton Dickinson, Washington, DC, USA) and analyzed with the FlowJo7.6.2 software (FlowJo LLC, Ashland, OR, USA). IFN-γ and TNF-α plasma levels were determined by cytometric bead array (CBA) analysis. The serum concentrations of cytokines were quantified using the CellQuest Pro and CBA software (Becton Dickinson, Washington, DC, USA) on a FACSCalibur Flow Cytometer (Becton Dickinson).
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3

Stimulation and Intracellular Cytokine Staining of PBMCs

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PBMCs were suspended in RPMI media (Invitrogen) and rested for 2 hours. One million cells were stimulated in vitro with phorbol 12-myristate 13-acetate and ionomycin or with overlapping peptides from SIV p27 protein for 9 hours at 37°C as previously described (58 (link)). After incubation, cells were washed and immunostained with Alexa Fluor 700–conjugated anti-CD3 (BD Biosciences, SP-234), BV650-conjugated anti-CD4 (BD Biosciences, L200), and PerCyP-Cy5.5–conjugated anti-CD8 (Biolegend, OKT4). Cells were washed, permeabilized using a Cytofix/Cytoperm Kit (BD Biosciences), and intracellularly immunostained with PE-Cy7–conjugated anti–IFN-γ (BD Biosciences, B27) and Alexa Fluor 488–conjugated anti–TNF-α (Invitrogen, Mab11).
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4

Quantifying Virus-Specific T-Cell Responses

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Seven-week-old Ifnar1−/− mice were infected with 1 × 105 FFU of Z7 (G10) or PBS (control). Mice were euthanized on D8 p.i. to collect splenocytes. The splenocytes (3 × 106) were plated in 6-well plates and re-stimulated with 0.1 MOI of Z1 for 24 h at 37 °C. During the final 8 h of the stimulation, Brefeldin A solution (BD Bioscience) was added in 1:1000 to block cytokine secretion. Cells were then stained with antibodies against mouse CD3 (FITC-conjugated, 0.25 µg/test, 1:200, BD Biosciences, catalog # 555274), CD4 (PerCp Cy 5.5-conjugated, 0.2 µg/test, 1:100, BD Biosciences, catalog # 550954), and CD8 (APC-conjugated, 0.2 µg/test, 1:100, BD Biosciences, catalog # 553035). Cells were fixed with 2% PFA overnight and permeabilized with 1 x Permeabilization buffer. Cells were then intracellularly stained with PE-Cy7 conjugated anti-IFNγ (0.2 µg/test, 1:100, BD Biosciences, catalog # 557649). Data were acquired using BD LSRFortessaTM Cell Analyzer (BD Biosciences) and analyzed with FlowJo (v10.8.0.) software.
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5

Lymphocyte Isolation from Tissues

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Lamina propria, lung and liver lymphocytes were isolated as described previously (31 (link)). Briefly, lamina propria lymphocytes from intestine were isolated using the Lamina Propria Dissociation Kit (Miltenyi Biotec) according to the manufacturer’s instructions followed by Percoll gradient centrifugation. Lungs were digested with collagenase D and lymphocytes were isolated by Percoll gradient centrifugation. Liver lymphocytes were isolated by Percoll gradient centrifugation. Single cell suspensions were treated with Gey’s solution and resuspended in PBS added with 2% BSA. Antibodies used for flow cytometric analysis were as follows. Percp-Cy5.5-conjugated anti-CD4 and anti-CD62L, APC-Cy7-conjugated anti-CD8 and anti-CD44, PE-conjugated anti-H2Kb, anti-CD62L, RORγt and anti-Foxp3, PE-Cy7- conjugated anti-IFNγ, anti-CD69, anti-CD8, anti-CD25 and anti-CD44, Alexa-647- conjugated anti-TNFα, FITC-conjugated anti-CD44, anti-CD4 and anti-H2kb, APC-conjugated anti-phos-Erk, anti-H2Kd and anti-IL-17 antibodies were purchased from BD Biosciences or eBioscience. In some experiments, cells were stained with an Aqua dead cell exclusion dye. Foxp3 staining kit was from eBioscience. Samples were applied to LSRII flow cytometer (Becton Dickinson), and data were collected and analyzed using FACSDiva software (Becton Dickinson).
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