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3 protocols using h pylori selective supplement dent

1

Clarithromycin Susceptibility Testing of H. pylori

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Gradient diffusion test (E‐test) (AB Biodisk, Solna, Sweden) was used to assess clarithromycin susceptibility in isolated H. pylori strains. The bacterial inoculum was prepared in Brucella Broth (BBL) from subcultures grown on Columbia Blood Agar (Oxoid) containing 7% (vol/vol) defibrinated horse blood (Oxoid) and H. pylori selective supplement (DENT) (Oxoid). The Mueller‐Hinton agar (Oxoid) supplemented with 5% (vol/vol) defibrinated sheep blood (Oxoid) was used to inoculate 100 µl of H.pylori culture suspension of a McFarland standard 3 (∼109 CFU/ml) turbidity in Brucella broth (BBL). Plates with clarithromycin E‐test strips were incubated at 37 °C in a jar including the GasPak Campy Container System (BD) under microaerophilic conditions for 72 h. The minimum inhibitory concentration (MIC) was considered the lowest concentration of the drug that inhibited visible growth of H. pylori. Isolates were defined as clarithromycin resistant when the MIC was ≥1 µg/ml, susceptible when MIC was <0.5 µg/ml, and intermediate when MIC was 0.5–1 µg/ml according to Clinical Laboratory Standard Institutes (CLSI) recommendation 42. However, these breakpoints were defined only for the agar dilution method and they have not yet been established for the E‐test. A plate without antibiotic strip was used to confirm the purity of the culture and the lack of contamination.
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2

Antimicrobial Effects of CBS on Bacteria

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P. mirabilis, P. aeruginosa, K. pneumoniae, L. hongkongensis, S. aureus, and S. saprophyticus were cultured in LB broth overnight at 37°C. The overnight culture was inoculated into fresh LB medium at OD600 of approximately 0.4; CBS (0, 2, 5, 10, 20, 50, 100, 200, 400 μM) was supplemented into the culture medium. H. pylori strain 26,695 or a clinical-isolated strain were cultured on Columbia agar base in the presence of 7% laked horse blood (Oxoid) and H. pylori selective supplement Dent (Oxoid) at 37°C under microaerobic conditions using Campygen 2.5L (Oxoid) for 3 d. The bacteria were then inoculated at OD600 of approximately 0.4 to Brucella broth in the presence of 1.4% β-cyclodextrin overnight at 37°C with agitation with the supplement of CBS (0, 2, 5, 10, 20 μM) into the culture medium.
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3

Antibody-Based Autophagy and ER Stress Assays

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Antibodies against LC3B, ATF4, ATG5, BECLIN1, cleaved caspase3 (Asp 175), p-EIF-2α, EIF-2α and ULK1 were purchased from Cell Signaling Technology. Antibodies against CHOP, p-PERK, tubulin and TBP as well as CHOP and ATF4 siRNAs were purchased from Santa Cruz Biotechnology. BECLIN1, ULK1 and PERK siRNA were purchased from Cell Signaling Technology. β-Actin antibody was obtained from Sigma. LC3B antibody from MBL was used for immunostaining. Bafilomycin A was purchased from EMD Biosciences. H. pylori selective supplement Dent was from Oxoid. Isovitalex, brainheart infusion (BHI) agar, BHI broth and blood agar were obtained from Difco, BBL. Annexin fluos was from Roche Applied Science. The EIF-2α (S51A) plasmid was a gift from Dr Kasper Rouschop, Maastricht University, The Netherlands.
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