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Nupage mes sds buffer

Manufactured by Thermo Fisher Scientific

NuPAGE MES SDS buffer is a ready-to-use, 20X concentrated buffer solution designed for use in denaturing polyacrylamide gel electrophoresis (SDS-PAGE) applications. It is optimized to maintain the stability and separation of proteins during the electrophoresis process.

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8 protocols using nupage mes sds buffer

1

Western Blot Analysis of Ft Protein

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Samples derived from 10 μg of Ft protein (~1 × 108 cells) were mixed with Laemmli sample buffer and boiled for 10 min prior to resolution through 4–12% gradient SDS-PAGE pre-cast gels (Invitrogen). The running buffer was NuPAGE MES SDS buffer from Invitrogen; gels were variously run at 90–160 V. Resolved gels were stained with either Coomassie blue (BioRad) or transferred to nitrocellulose membranes. Coomassie-stained gels were scanned into Adobe Photoshop using an HP 2820 scanner. Membranes were blocked for 30 min with PBS, 0.05% Tween 20, 5% non-fat dry milk. Primary Abs were applied for overnight incubation at dilutions ranging from 1:1,000 to 1:60,000. Blots to be probed multiple times were first probed with mAb prior to stripping and reprobing with polyclonal sera. HRP-conjugated secondary Abs were used at dilutions ranging from 1:1,000 to 1:20,000. Occasionally the secondary conjugate was a biotinylated goat α-species-specific Ab followed by a tertiary conjugate of streptavidin-linked HRP. Development of the chemiluminescent substrate (SuperSignal West Pico, Pierce, Rockford, IL) was visualized using an Alpha Innotech imaging system in movie mode. Densitometric analysis of developed blots was performed on the same system.
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2

Western Blot Analysis of Ft Protein

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Whole cell samples containing 10 μg of Ft protein (~1x108 cells) were mixed with Laemmli sample buffer and boiled for 10 min prior to resolution through 4–12% gradient SDS-PAGE pre-cast gels (NuPAGE Bis-Tris, Invitrogen). The running buffer was NuPAGE MES SDS buffer from Invitrogen; gels were run at 120 V. Resolved gels were stained with either Coomassie blue (BioRad) or transferred to nitrocellulose membranes. Coomassie-stained gels were scanned into Adobe Photoshop using an HP LaserJet Pro 300 color (MFP-m375nw) scanner. Membranes were cut into sections, each containing one lane of WT and one lane of wbtA. Membrane sections were blocked in parallel for 30 min with PBS, 0.05% Tween 20, 5% non-fat dry milk. Rabbit sera (α-PBS, α-S4ΔguaBA prime, α- S4ΔaroD prime, α- S4ΔguaBA prime-boost, α- S4ΔaroD prime-boost) were applied in parallel for overnight incubation at a dilution of 1:1000 in PBS, 0.05% Tween 20. HRP-conjugated goat anti-rabbit secondary Ab (Southern Biotech 4010–05) was used at a dilution of 1:5000 in PBS, 0.05% Tween 20. Development of the chemiluminescent substrate (SuperSignal West Pico, Pierce, Rockford, IL) from the 5 individual membrane sections was visualized simultaneously using an BioRad ChemiDoc Touch Imaging System.
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3

Immunoblot Analysis of Ft Protein

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Samples derived from 10 µg (~1 × 108 cells) of Ft were mixed with Laemmli sample buffer (BioRad, Hercules, CA, USA) and boiled for 10 min prior to resolution through 4–12% gradient SDS-PAGE precast gels (Invitrogen, Carlsbad, CA, USA). The running buffer was NuPAGE MES SDS buffer (Invitrogen). Gels were run at 90–160 V. Resolved gels were stained with either Coomassie blue (Bio-Rad) or transferred to nitrocellulose membranes. Coomassie-stained gels were scanned into Adobe Photoshop. Membranes were then blocked for 30 min with PBS, 0.05% Tween 20, 5% non-fat dry milk. Primary Abs were applied for overnight incubation at dilutions ranging from 1:500 to 1:60,000 in PBS-Tween. Following five washes with PBS-Tween, the membranes were incubated for 1 h with agitation with biotinylated goat anti-mouse IgG (H + L, Southern Biotech, Birmingham, AL, USA). Following an additional five washes with PBS-Tween, the membranes were incubated for 1 h with agitation with streptavidin-conjugated horseradish peroxidase (Southern Biotech). Development of the chemiluminescent substrate (SuperSignal West Pico, Pierce, Rockford, IL, USA) was visualized using an Alpha Innotech imaging system in movie mode. Densitometric analysis of developed blots was performed as previously described (7 (link), 9 (link)).
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4

Protein Extraction and Immunoblotting Protocol

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Cells were lysed using radioimmunoprecipitation buffer (25 mM Tris•HCl pH 7.6, 150 mM NaCl, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS; Thermo Fisher) containing protease and phosphatase inhibitors (Thermo Fisher). After a 30 minute incubation at 4°C with occasional vortexing, samples were centrifuged at 4°C for 10 min at 21,130 × g to generate protein lysates. Protein concentration was obtained using the bicinchoninic acid assay (Pierce/Thermo Scientific). Thirty μg of protein were separated using NuPAGENovex 4–12% Bis-Tris gels (Invitrogen) with NuPAGE MES SDS buffer (Invitrogen) and then transferred to a nitrocellulose membrane (Invitrogen) using an iBlot 2 transfer apparatus (Invitrogen). Membranes were blocked for one hour at room temperature in Odyssey blocking buffer (LI-COR Biosciences) and probed overnight at 4°C with primary antibodies (described in Supp. Table S1) diluted 1:10,000 in Odyssey blocking buffer supplemented with 0.1% Tween-20. Membranes were washed with TBST and antigen–antibody complexes were detected using fluorescent secondary antibodies (LI-COR Biosciences) and visualized with a LI-COR infrared imaging system (Odyssey Fc). Cellular fractionation was performed using a Nuclear Extract Kit (Active Motif) as directed by manufacturer’s instructions.
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5

SDS-PAGE and Western Blotting Protocol

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Protein samples were resolved by SDS–PAGE using the following systems: NuPAGE Novex 4 - 12% Bis-Tris gels (NP0321 and WG1402A, ThermoFisher Scientific) with NuPAGE MOPS SDS buffer (NP0001, ThermoFisher Scientific) or NuPAGE MES SDS buffer (NP0002, ThermoFisher Scientific); NuPAGE Novex 3 - 8% Tris-Acetate gels (EA0375BOX and WG1602BOX, ThermoFisher Scientific) with NuPAGE Tris-Acetate SDS buffer (LA0041, ThermoFisher Scientific). The resolved proteins were either stained with colloidal Coomassie blue dye (‘Instant Blue’, ab119211, Abcam), or else were transferred onto a nitrocellulose iBlot2 membrane (2NR290123-01, ThermoFisher Scientific) with the iBlot2 Dry Transfer System (IB21001, Invitrogen), according to the manufacturer’s instructions.
The antibodies used for immunoblotting in this study are described in Table S5. Chemoluminescent signals were detected by azure-biosystems 300Q with ECL Western Blotting Detection Reagent (17039552, GE Healthcare).
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6

SDS-PAGE and Western Blot Protein Analysis

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Protein samples were resolved by SDS–PAGE using the following systems: NuPAGE Novex 4 ‐ 12% Bis‐Tris gels (NP0321 and WG1402A, Thermo Fisher Scientific) with NuPAGE MOPS SDS buffer (NP0001, Thermo Fisher Scientific) or NuPAGE MES SDS buffer (NP0002, Thermo Fisher Scientific); NuPAGE Novex 3 ‐ 8% Tris‐Acetate gels (EA0375BOX and WG1602BOX, Thermo Fisher Scientific) with NuPAGE Tris‐Acetate SDS buffer (LA0041, Thermo Fisher Scientific). The resolved proteins were either stained with colloidal Coomassie blue dye (“Instant Blue”, ab119211, Abcam), or else transferred onto a nitrocellulose iBlot membrane (NRO11020‐01, Thermo Fisher Scientific) with the iBlot Dry Transfer System (IB1001, Invitrogen), according to the manufacturer’s instructions.
The antibodies used for immunoblotting in this study are described in Appendix Table S1. Chemiluminescent signals were detected on Hyperfilm ECL (Amersham, 66601, GE Healthcare) using ECL Western Blotting Detection Reagent (17039552, GE Healthcare). New antibodies that were generated in this study are validated in Appendix Fig S4.
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7

SDS-PAGE and Western Blot Analysis

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Protein samples were resolved by SDS–PAGE in NuPAGE Novex 4–12% Bis-Tris gels (Thermo Fisher Scientific, NP0321 and WG1402A) either with NuPAGE MOPS SDS buffer (Thermo Fisher Scientific, NP0001) or NuPAGE MES SDS buffer (Thermo Fisher Scientific, NP0002), or with NuPAGE Novex 3–8% Tris–Acetate gels (Thermo Fisher Scientific, EA0375BOX and WG1602BOX) using NuPAGE Tris-Acetate SDS buffer (Thermo Fisher Scientific, LA0041). Resolved proteins were either stained with InstantBlue (Expedeon, ISB1L) or were transferred to a nitrocellulose membrane with the iBlot2 Dry Transfer System (Invitrogen, IB21001S). Antibodies used for protein detection in this study are described in Supplementary file 1. Conjugates to horseradish peroxidase of anti-sheep IgG from donkey (Sigma-Aldrich, A3415), or anti-mouse IgG from goat (Sigma-Aldrich, A4416) were used as secondary antibodies before the detection of chemiluminescent signals on Hyperfilm ECL (cytiva, 28906837, 28906839) with ECL Western Blotting Detection Reagent (cytiva, RPN2124).
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8

SDS-PAGE and Western Blotting Protocol

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Protein samples were resolved by SDS–PAGE using the following systems: NuPAGE Novex 4 - 12% Bis-Tris gels (NP0321 and WG1402A, ThermoFisher Scientific) with NuPAGE MOPS SDS buffer (NP0001, ThermoFisher Scientific) or NuPAGE MES SDS buffer (NP0002, ThermoFisher Scientific); NuPAGE Novex 3 - 8% Tris-Acetate gels (EA0375BOX and WG1602BOX, ThermoFisher Scientific) with NuPAGE Tris-Acetate SDS buffer (LA0041, ThermoFisher Scientific). The resolved proteins were either stained with colloidal Coomassie blue dye (‘Instant Blue’, ab119211, Abcam), or else were transferred onto a nitrocellulose iBlot2 membrane (2NR290123-01, ThermoFisher Scientific) with the iBlot2 Dry Transfer System (IB21001, Invitrogen), according to the manufacturer’s instructions.
The antibodies used for immunoblotting in this study are described in Table S5. Chemoluminescent signals were detected by azure-biosystems 300Q with ECL Western Blotting Detection Reagent (17039552, GE Healthcare).
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