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6 protocols using propidium iodide p3566

1

Cytofluorometric Analysis of HCMV-Infected OECs

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Cells (1 × 105) were collected from uninfected OECs, HCMV-infected OECs and CTO cells. Cells were fixed, permeabilized, and stained as previously reported [19 (link)]. Cytofluorometric analysis was achieved using a BD LSRFortessa X-20 (BD Biosciences) flow cytometer. FACSDiva software (BD Biosciences) was used for data collection and analysis. The antibodies used are provided in Supplementary Table 2. For cell cycle analysis, uninfected OECs or CTO cells were washed in 1X PBS, fixed in 70% ethanol, and resuspended in 50 µg/ml propidium iodide (P3566, life technologies, Eugene, USA) with 0.1 mg/ml RNase (R4642, Sigma-Aldrich, Saint-Louis, MO, USA), then incubated at 37 °C for 30 min as described previously [17 (link)].
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2

Comprehensive Antibody Library for Stem Cell Research

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Rabbit antibodies against TRIM28 (4124S, 4123S), CTCF (3418S), OCT4A (2890S), SOX2 (23064S), NANOG (3580S), KLF4 (12173S), SUMO2 (4971S), and mouse antibodies against TRA-1-60 (4746T), TRA-1-81(4745T), SSEA-4 (4755T), and SMA (D4K9N) were from Cell Signalling Technology. Anti-SALL4 (ab29112), anti-TRIM24 (ab70560), anti-NOP58 (ab155556), anti-NESTIN (ab196908) were from Abcam. Mouse antibody against α-Tubulin was from Bethyl Laboratories, mouse anti-LaminA/C antibody was from Sigma Aldrich (SAB4200236), rabbit anti-mCherry (PA5-34974), rabbit anti-TRIM33 (PA5-82152) were from Invitrogen, and mouse anti-HIS (34650) was from Qiagen. Rabbit anti-CYTOKERATIN17 was a gift from R. Hickerson (University of Dundee). Sheep antibodies against SUMO1, SUMO2 (27 (link)) were generated in-house. Secondary antibodies conjugated with HRP and Alexa fluorophores, Cy3 Cellmask (C10045), Rhodamine Phalloidin (R415) were from Sigma and Invitrogen, respectively. ML792 (1644342-14-2), MG132 (474787), and N-ethylmaleimide (E3876) were from Sigma Aldrich. Protease Inhibitor cocktail (11836170001) was from Roche. Propidium iodide (P3566) and DAPI (D1306) were from Life Technologies.
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3

Domatinostat Anticancer Compound Experiment

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Domatinostat (4SC-202; S7555) was purchased from Selleck Chemicals (Houston, TX, USA). Domatinostat was dissolved in DMSO to prepare a 10 mM stock solution. Propidium iodide (P3566) and Hoechst33342 (H3570) solutions were purchased from Thermo Fisher Scientific Inc. (Waltham, MA, USA). An antibody against FOXM1 (ab207298) was purchased from Abcam plc (Cambridge, UK). Antibodies against Survivin (#2808), GAPDH (#5174), cleaved PARP (#9541), and cleaved caspase 3 (#9661) were purchased from Cell Signaling Technology Inc. (Beverly, MA, USA). Horseradish peroxidase (HRP)-conjugated anti-rabbit IgG and anti-mouse IgG secondary antibodies were purchased from Jackson ImmunoResearch (West Grove, PA, USA).
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4

Domatinostat Protocol for Cell Studies

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Domatinostat (4SC-202; S7555) was purchased from Selleck Chemicals (Houston, TX, USA). Domatinostat was dissolved in DMSO to prepare a 10 mM stock solution. The structure of domatinostat was obtained from DrugBank [38 (link)]. Propidium iodide (P3566) and Hoechst33342 (H3570) solutions were purchased from Thermo Fisher Scientific, (Waltham, MA, USA). Trypan blue solution (T8154) was purchased form Merck (Darmstadt, Germany). Antibodies against Bmi1 (05-637) and Nestin (MAB5326) were purchased from Merck. An antibody against SOX2 (MAB2018) was purchased from R&D Systems Inc. (Minneapolis, MN, USA). Anti-CD133 (W6B3C1) was purchased from Miltenyi Biotech (Bergisch Gladbach, Germany). Antibodies against, OCT-4a (#2890), GAPDH (#5174), cleaved PARP (#9541), and cleaved caspase 3 (#9661) were purchased from Cell Signaling Technology Inc. (Beverly, MA, USA).
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5

Detecting DNA Damage and Repair

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Mitomycin C (MMC, M0503), diepoxybutane (DEB, ref. 202533-16) 5-bromo-2-deoxyuridine (BrdU, B5002) and Hoechst 33258 (B2883) and IGEPAL (I8896) were from Sigma (Madrid, Spain). Ethidium monoazide bromide (EMA, e1374) and Sytox Green (S7020) were from Thermofischer Scientific (Barcelona, Spain). PARP inhibitor Olaparib (S1060) was from Selleckchem (Munich, Germany). Propidium iodide (P3566) and RNAse (12091021) were from Invitrogen (Barcelona, Spain). Colcemid was from Gibco (Barcelona, Spain). Antibodies used included: mouse monoclonal to CDK5RAP3 (ab57817), rabbit polyclonal to BRCA2 (ab123491), mouse monoclonal to RPA32 (ab2175), rabbit polyclonal to actin (ab1801), rabbit polyclonal to GAPDH (ab9485) and mouse monoclonal to vinculin (ab18058) were from Abcam (Cambridge, UK). Rabbit polyclonal to RAD51 (SC8349) was from Santa Cruz biotechnology (Heidelberg, Germany).
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6

Fetuin-A Modulates Inflammatory Responses

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Palmitic acid (P9767), low endotoxin and fatty acid free‐bovine serum albumin (BSA) (A8806), LPS (L2630), and IL‐1β (I5271) were purchased from Sigma (St. Louis, MO). Recombinant murine interferon‐gamma (CTK‐358‐2PS) was from MoBiTec (Goettingen, Germany). Type‐1 collagen was from BD Biosciences. Annexin V (A23204) and propidium iodide (P3566) were from Invitrogen (Eugene, Oregon).
Anakinra (Kineret®) was purchased from SOBI (Swedish Orphan Biovitrum AB). TAK‐242 (tlrl‐cli95) was from InvivoGen (Distributed by LabForce AG, Switzerland). Murinized Anti‐IL‐1β Ab is a noncommercialized product provided by Novartis. Bovine FetA was kindly provided by Prof. Jahnen‐Dechent, Aachen University, Germany, and the levels of endotoxins were tested in his laboratory with Endosafe ultrasensitive PTS, Charles River. Murine FetA was donated by Prof. Bhattacharya, Visva‐Bharati University, West Bengal, India. Experiments shown in Figure 1C and D were performed with murine FetA. All other experiments were done with bovine FetA.
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