Next steps were performed based on the protocol described in the publication of Rensen (Rensen et al. 2022) . Tris-EDTA buffer (TE) (SigmaAldrich USA), pH = 8 was added to the synthesized oligonucleotides and the fluorescent probe (which were delivered in the form of a lyophilisate) in a volume specified for each sequence by the company (Genomed, Poznan, Poland) in order to obtain a solution with a concentration of 100µM. The fluorescent probe (100 µM) was frozen at -20 °C until the hybridization process was carried out. Each oligonucleotide was diluted in a separate tube to a concentration of 20 µM (20 µl of oligonucleotide was mixed with 80 µl of TE). 10 µl of each oligonucleotide (20 µM) of positive polarity was added to one test tube, and 10 µl of each oligonucleotide (20 µM) of negative polarity was added to the other. As in the case of the fluorescent probe, the oligonucleotides were stored at -20 °C until the hybridization process was carried out.
Tris edta buffer te
Tris-EDTA buffer (TE) is a commonly used buffer solution in molecular biology and biochemistry. It consists of a mixture of Tris base and EDTA (ethylenediaminetetraacetic acid) in aqueous solution. The primary function of TE buffer is to maintain a stable pH environment and chelate divalent cations, such as magnesium and calcium, which can interfere with various enzymatic reactions and nucleic acid manipulations.
Lab products found in correlation
4 protocols using tris edta buffer te
Dual-Labeled Oligonucleotides for Probe Hybridization
Next steps were performed based on the protocol described in the publication of Rensen (Rensen et al. 2022) . Tris-EDTA buffer (TE) (SigmaAldrich USA), pH = 8 was added to the synthesized oligonucleotides and the fluorescent probe (which were delivered in the form of a lyophilisate) in a volume specified for each sequence by the company (Genomed, Poznan, Poland) in order to obtain a solution with a concentration of 100µM. The fluorescent probe (100 µM) was frozen at -20 °C until the hybridization process was carried out. Each oligonucleotide was diluted in a separate tube to a concentration of 20 µM (20 µl of oligonucleotide was mixed with 80 µl of TE). 10 µl of each oligonucleotide (20 µM) of positive polarity was added to one test tube, and 10 µl of each oligonucleotide (20 µM) of negative polarity was added to the other. As in the case of the fluorescent probe, the oligonucleotides were stored at -20 °C until the hybridization process was carried out.
DNA-Functionalized Surface Characterization
• Capture DNA (5′ → 3′): thiol-C6-GCCTTCACAGGGTCCTTTATGT.
• Complementary target DNA (5′ → 3′): ACATAAAGGACCCTGTGAAGGC.
Rapid Bacterial DNA Extraction
Ruminal Content Extraction and Preservation
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