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Bn gradient gels

Manufactured by Thermo Fisher Scientific

4–16% BN gradient gels are electrophoresis gels used for the separation and analysis of protein complexes. These gels feature a continuous gradient of 4% to 16% polyacrylamide concentration, which allows for the effective separation of a wide range of protein complex sizes.

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3 protocols using bn gradient gels

1

Native Protein Complex Analysis

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BN-PAGE was performed using the NativePAGE Bis-Tris Gel System (Thermo Fisher Scientific). Briefly, cells expressing both reporters were harvested without TfR silencing, washed with HBS, and solubilized in NativePAGE sample buffer supplemented with 10% glycerol, 1% DDM (n-dodecyl-β-d-maltoside), 1× protease inhibitor cocktail, and 100 μg/ml DNaseI. The samples were incubated in the solubilization buffer on ice for 30 min and centrifuged (13,000 × g at 4°C, 1 h), and the resulting supernatants were either untreated or treated with 4 M urea to denature protein complexes. Samples were then fractionated on precast 4–16% BN gradient gels (Thermo Fisher Scientific). After electrophoresis, proteins were transferred to polyvinylidene membranes (Millipore) and detected by our standard immunoblotting protocol with anti-HA or anti-VSG221.
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2

Native Protein Fractionation by BN-PAGE

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BN-PAGE was performed using the NativePAGE Bis-Tris gel system (Thermo). Briefly, cells were washed three times with 1X PBS supplemented with protease inhibitor cocktail without EDTA (Roche) and solubilized in Native PAGE sample buffer supplemented with 10% glycerol, 1% n-dodecyl-b-d-maltoside, 1x protease inhibitor cocktail without EDTA (Roche), 100 μg/ml microccocal nuclease (NEB), and 1x microccocal nuclease buffer (NEB). Samples were incubated in solubilization buffer on ice for 30 min and centrifuged (13,000 g at 4 ˚C, 30 min). The resulting supernatants were fractionated on precast 4–16% BN gradient gels (Thermo).
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3

Native-PAGE Analysis of Protein Complexes

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BN-PAGE was performed using the NativePAGE Bis-Tris Gel System (Thermo Fisher Scientific, Waltham, MA). Briefly, cells were harvested, washed with HBS and solubilized in NativePAGE Sample Buffer supplemented with 10% glycerol, 1% DDM (n-dodecyl-β-D-maltoside), 1X protease inhibitor cocktail and 100 μg/ml DNaseI. The samples were incubated in the solubilization buffer on ice for 30 min, centrifuged (13000g at 4°C, 1 hr), and the resulting supernatants were either untreated or treated with 4M urea to denature protein complexes. Samples were then fractionated on precast 4–16% BN gradient gels (Thermo Fischer Scientific). After electrophoresis, proteins were transferred to PVDF membranes (Millipore Corp., Bedford, MA) and detected by our standard immunoblotting protocol with anti-TfR or anti-VSG221.
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