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124 protocols using anhydrous ethanol

1

In vitro RNA structure probing

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Benzoyl cyanide (BzCN) probing was performed by splitting the sample into 25 μl aliquots and mixing with 2.78 μl of 400 mM BzCN (Sigma-Aldrich) dissolved in anhydrous DMSO (Sigma-Aldrich) [(+) sample)] or with anhydrous DMSO [(−) sample]29 (link),30 (link). Given that the BzCN probing reaction is complete within ~1 s, 75 μl of TRIzol LS reagent (Invitrogen) was added to each sample without any additional incubation time to stop the in vitro transcription reaction and the samples were vortexed.
Dimethyl sulfate (DMS) probing was performed by splitting the sample into 25 μl aliquots and mixing with 2.78 μl of 6.5% (v/v) DMS (Sigma-Aldrich) in anhydrous ethanol (Sigma-Aldrich) [(+) sample)] or with anhydrous ethanol [(−) sample] and incubating the samples at 37°C for 5 min. The DMS probing reaction was quenched by adding beta-mercaptoethanol to 2.8 M and incubating the sample at 37°C for 1 min. 75 μl of TRIzol LS reagent was added to each sample to stop the in vitro transcription reaction and the samples were vortexed.
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2

Synthesis of Organosilica Catalysts

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Tetraethyl orthosilicate
(TEOS, 98%), 1H,1H,2H,2H-perfluorodecyltriethoxysilane (PFDTES, 97%),
(3-mercaptopropyl)triethoxysilane (MPTES, >80%), isobutyltriethoxysilane
(IBTES, ≥95%), trichloro(1H,1H,2H,2H-perfluorooctyl)silane
(97%), 3-Aminopropyltriethoxysilane (APTES, 99%), lithium hydroxide
pellets (99%), ammonium hydroxide solution (28–30%), Rhodamine
B isothiocyanate (mixed isomer), anhydrous ethanol (99.9%), acetonitrile
(99.8%), tetrahydrofuran (99.9%), palladium(II) acetate (98%), and
potassium borohydride (KBH4, 98%), all purchased from Sigma-Aldrich,
were used to prepare the catalytic organosilica particles and isopropyl-based
POSS. Benzyl alcohol (>99%), benzaldehyde (99%), anhydrous ethanol
(99.9%), acetone (>99.5%), decane (>99%), isopropanol (≥99.5%),
dodecane (≥99%), methanol (≥99.8%), dichloromethane
(≥99.8%), octane (≥98%), 1-octene (98%), and toluene
(≥99.5%), also supplied by Sigma-Aldrich, were used for the
foaming tests and oxidation reactions.
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3

Fabrication of Ti/Graphene Composites

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Commercially pure titanium (Cp-Ti) powder (average diameter 30 μm, sphere-like, Grade IV) and graphene powder were obtained from the Institute of Solidification Science and Technology, Shanghai Jiao Tong University. For mixing graphene powder with Ti powder uniformly, we firstly added graphene powder into anhydrous ethanol (Sigma-Aldrich, United States) and performed 2–3 h ultrasonic dispersion. After 1,000–1,500 r/min magnetic stirring and 100–200 r/min ball-milling, the Ti/Gr composite powder (particle size of 10–60 μm) was eventually obtained through 240-mesh sieves. Next, spark plasma sintering (SPS) was carried out in the vacuum environment at 900°C and 50 MPa to obtain disk-shaped samples (10 mm diameter, 1 mm thickness). Then the disks were polished with SiC paper (150 rpm, 20 N, EcoMet 30, Buehler, Germany), and washed with anhydrous ethanol, acetone (Sigma-Aldrich, United States), and de-ionized (DI) water sequentially (30 min each) in an ultrasonic bath. The control and the test groups were labeled as Cp-Ti and Ti-0.125G, respectively.
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4

Hydroxyapatite Materials Synthesis and Characterization

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All the chemicals were used as received from the manufacturer. For the preparation of the HA materials, calcium nitrate tetrahydrate (Ca(NO3)·4H2O, AR), triethyl phosphate (P(OC2H5)3, AR), diammonium hydrogen phosphate ((NH4)2HPO4, AR), Pluronic F127, polyvinyl alcohol (PVA), and 10× concentrated phosphate buffered saline (10× PBS) all came from Sigma-Aldrich, while anhydrous ethanol was from Merck (Darmstadt, Germany). Protein adsorption and cell culture studies required bovine serum albumin (BSA), vitronectin, BCATM Protein Assay Kit, hexamethyldisilane (HMDS), and sodium dodecyl sulphate (SDS, AR) all from Sigma-Aldrich; Minimum Essential Media (MEM), Glutamax, Non-Essential Amino Acids (NEAA), Antibiotic-Antimycotic solution (Anti-Anti), and TrypLE Express were purchased from Invitrogen; MTS reagent from Promega, and Fetal Bovine Serum (FBS) from SAFC Biosciences (Hampshire, England). The water used in all experiments was passed through a Millipore (Boston, MA, USA) Milli Q ultrapure water purification system and had a resistivity higher than 18.2 MΩcm.
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5

Heteroaryl Nitrones as Spin Traps

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The newly developed heteroaryl nitrones studied as spin traps are summarized in Fig. 2. 5,5-Dimethyl-1-pyrroline-N-oxide (DMPO, Fig. 1), dimethylsulfoxide, anhydrous sodium sulfite, monobasic potassium phosphate, sodium hydroxide, N-methyl-d-glucamine (MGD), diethylenetriaminepentaacetic acid, xanthine, and xanthine oxidase were purchased from Sigma-Aldrich. Sodium azide, hydrogen peroxide aqueous solution (30%), anhydrous ethanol, dibasic sodium phosphate heptahydrate, methanol, carbon disulfide, and sodium nitrite were purchased from Merck. Ferrous ammonium sulfate hexahydrate was purchased from Mallinckrodt Baker.
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6

Organosolv Lignin Characterization and Substrate Preparation

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The organosolv lignin (L1) was
supplied by Chemical Point UG (Deisenhofen, Germany) and used without
any pretreatment. The softwood lignin (L2) and wheat
straw lignin (L3) were supplied by BOC Sciences and used
without pretreatment. The olive stone lignin (L4) was
sourced from olive stone from the Mediterranean region and prepared
as outlined in previous studies41 (link),42 (link) via an organosolv process
in a steam explosion reactor at 180 °C without an acid catalyst.
The pretreated solid was separated from the liquor by vacuum filtration
and recovered from the liquor by centrifugation after ethanol removal
in a rotary evaporator. The lignin was finally air-dried and stored
at room temperature for 18 months.
Silicon <100> p-type
wafers
and with a native oxide (NO) layer and silicon wafers with a thermal
oxide layer (200 nm) were used as substrates. Ni(NO3)3·6H2O (nickel hydrate hexahydrate), ACS reagent,
≥98%), tetrahydrofuran (THF) (inhibitor free), anhydrous ethanol,
and acetone (MERCK, Ireland) were high-performance liquid chromatography
grade and used as received. Deionized water was used where necessary.
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7

Mussel Metabolite Extraction Protocol

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The mussel sample was purchased from the local Changxing market in Dalian and stored in a −80 °C freezer pending further analysis.
Cyclohexanone (>99.5%), methyl tertiary butyl ether (≥99.9%, HPLC gradient grade), and acetone (99.5%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Methanol (≥99.9%, HPLC gradient grade), acetonitrile (≥99.9%, HPLC gradient grade), formic acid (98%, HPLC gradient grade), isopropyl alcohol (99.9%, HPLC gradient grade), and anhydrous ethanol (>99.9%) were purchased from Merck (Darmstadt, Germany).
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8

Tocopherol and Phytosterol Quantification

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Tocopherol standards (α-tocopherol, β-tocopherol, γ-tocopherol and δ-tocopherol, purity>98%) were obtained from Sigma-Aldrich Chemical (Nanjing, China). Brassicasterol, campesterol, and β-sitosterol standards (purity≥98%) were also purchased from Sigma-Aldrich Chemical (Nanjing, China). N-hexane, methanol, anhydrous ethanol, acetonitrile (HPLC grade) were obtained from Merck (Nanjing, China). Trolox, AAPH, fluorescein, PBS and other solvents and reagents (analytical grade) were purchased from Sinopharm Chemical Reagent (Shanghai, China).
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9

MALDI-TOF MS Protocol for Bacterial Identification

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Centrifuge tubes, masks, and safety glasses were purchased from Shanghai Titan Scientific Co., Ltd. (Shanghai, China). α-Cyano-4-hydroxycinnamic acid (CHCA), formic acid (analytical reagent [AR]), anhydrous ethanol (AR), trifluoroacetic acid (AR), and acetonitrile (ACN) were purchased from Merck (Darmstadt, Germany). Tryptone soybean agar and LB broth were purchased from Beijing Land Bridge Technology Co., Ltd. (Beijing, China). An ATL-032R digital shaker (Shanghai Chemstar Instruments Co., Ltd. China), centrifuge (Shanghai Boyu Instruments Co., Ltd.), and autoclave (Shanghai Boxun Industry & Commerce Co., Ltd.) were used. The MALDI-TOF MS system used an M-Discover 100 mass spectrometer (Zhuhai Meihua Medical Technology Co., Ltd., China) in linear positive mode with m/z range 2 to 20 kDa. Metabo Analyst 4.0 (McGill University, Montreal, Canada) was used for analysis (41 (link)).
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10

Rare Earth Oxide-based Thin Film Synthesis

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Er2O3 (99.9%), Yb2O3 (99.9%), Tm2O3 (99.9%), Nd2O3 (99.9%), tantalum ethoxide (99.98%), 2-ethoxyethanol (99%) and tetraethylorthosilicate (TEOS, 98%) were purchased from Sigma Aldrich. Anhydrous ethanol (≤0.005% H2O) was obtained from Merck. HCL PA-ACS-ISO (37wt%) were acquired from Panreac.
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