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Lysis buffer

Manufactured by Beyotime
Sourced in China, United States

Lysis buffer is a solution used to break down and lyse cells, releasing their contents. It is a core component in various biological and biochemical procedures, such as protein extraction and sample preparation. The buffer's primary function is to disrupt cell membranes and organelles, allowing for the extraction and isolation of cellular components, including proteins, nucleic acids, and other biomolecules.

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984 protocols using lysis buffer

1

Exosome RNA and Protein Extraction

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Pelleted exosomes from serum were resuspended in 500 µL of TRIzol (Sigma, USA) for qPCR analysis or in 200 µL of lysis buffer (Beyotime Biotechnology, China) for protein analysis, while exosomes from the cell supernatants were diluted in 250 µL of TRIzol or 100 µL of lysis buffer 59 (link).
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2

Western Blot Analysis of Protein Expression

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Cells were seeded in a six-well plate (5 × 105 H9c2 cells/well) cultured in high-glucose DMEM supplemented with 10% FBS and then treated with CoCl2 or HT for indicated doses and time. Proteins were isolated by lysis buffer (Beyotime).
After the animals were sacrificed, the heart tissues were disrupted by homogenization on ice with lysis buffer. After centrifugation, protein extracts were collected.
Protein lysates were separated on 10% SDS-PAGE, transferred onto the PVDF membranes, and blocked with 5% non-fat milk for one hour, and then incubated with primary antibodies overnight at 4 °C and secondary antibodies for one hour at room temperature. Membranes were again washed with TBST and immunoreactive proteins were visualized using ECL Western blotting detection reagents (Cell Signaling Technology) were used to detect immunoreactive proteins[17 (link)].
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3

Western Blot Analysis of Protein Lysates

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Retina or cell lysates were prepared by incubating tissue or cell pellets with ice-cold 1x lysis buffer (Beyotime Biotechnology, China) supplemented with cOmpleteTM proteinase inhibitor cocktail (Roche, Switzerland) and phosphatase inhibitor cocktail (Roche, Switzerland) on ice for 20 min. Lysates were then centrifuged at 12,000 g at 4°C for 15 min to remove the insoluble fractions. The supernatant was then mixed with ×5 sample loading buffer (Beyotime Biotechnology, China) and boiled for 7 min. Denatured proteins were separated by SDS-PAGE using 4–20% SurePAGE, Bis-Tris precast protein gels (GenScript, China) and transferred to Immun-Blot® PVDF membranes (Millipore, United States). Membranes were blocked with 5% non-fat milk or 5% BSA in 1x TBS buffer containing 0.05% Tween 20 (TBST), incubated with primary and secondary antibodies diluted according to manufacturers’ instructions, and washed five times with ×1 TBST. Protein bands were visualized with Immobilon Western Chemilum HRP Substrate (Millipore, United States) on a BioSpectrum imaging system (Ultra-Violet Products, China).
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4

miR-34c-5p Regulates CRABP2 and LINC01816 Expression

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Cells were plated into 6-cm culture dishes at a density of 5×105 cells/ml. The Wt or mutant (Mut) 3′-UTR sequences of CRABP2 and LINC01816 were cloned into a psiCHECK2 luciferase reporter plasmid (Promega Corporation) containing Renilla and firefly luciferase. The luciferase reporter vectors and miR-34c-5p were co-transfected into C643 or OCUT-2C cells using Lipofectamine 3000, according to the manufacturer's protocol. Following 24 h of transfection, cells were lysed with 1X lysis buffer (Beyotime Institute of Biotechnology) and the relative luciferase activity was measured using a Dual-Luciferase Reporter assay system (Beyotime Institute of Biotechnology). Firefly luciferase activity was normalized to Renilla luciferase activity.
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5

Western Blot Analysis of Protein Lysates

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R28 cell lysates were prepared by incubating cells with ice-cold 1x lysis buffer (Beyotime Biotechnology, China), cOmplete proteinase inhibitor cocktail (Roche, Switzerland) and Phosphatase Inhibitor Cocktail (Roche, Switzerland) on ice for 20 minutes. Cell lysates were then centrifuged at 12,000 g at 4℃ for 15 minutes to remove the insoluble fractions. The supernatant was then mixed with 5x sample loading buffer (Beyotime Biotechnology, China) and boiled for 7 minutes. Denatured proteins were separated by SDS-PAGE using 4-20% SurePAGE, Bis-Tris precast protein gels (GenScript, China) and transferred to Immun-Blot PVDF membranes (Millipore). Membranes were blocked with 5% non-fat milk or 5% BSA in 1x TBS buffer containing 0.05% Tween 20 (TBST), incubated with primary and secondary antibodies diluted according to manufacturers' instructions, and washed ve times with 1x TBST. Protein bands were visualized with Immobilon Western Chemilum HRP Substrate (Millipore, USA) on a BioSpectrum imaging system (Ultra-Violet Products, China).
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6

Isolation and Culture of Murine ADSCs

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Adipose‐derived mesenchymal stem cells were isolated from inguinal subcutaneous adipose tissue as previously described.7 Briefly, adipose tissues were cut into small pieces in phosphate‐buffered saline (PBS) on ice. The minced tissue was then digested with 1 mg/mL Type 1 collagenase (Worthington‐Biochem, LS004196) at 37°C for 1 hour. The digested tissue was filtered through a 70 µm mesh (Corning, 431751) to remove tissue debris. The cell suspension was then centrifuged at 600 g for 15 minutes to remove collagenase. The cell pellet was plated in 100 mm dishes and incubated with 1× lysis buffer (Beyotime, C3702) at room temperature for 10 minutes to lyse red blood cells. After lysis of red blood cells, the pellets were maintained in mouse ADSCs complete medium (Cyagen, MUBMD‐90011) at 37°C in an atmosphere with 5% CO2. Medium was changed after 24 hours and then every second day. ADSCs were used for subsequent experiments from the second passage. Recombinant mouse IL‐11 protein (R&D Systems, 418‐ML), Stattic (Selleck, S7024) and anti‐IL‐11Rα (R&D systems, AF490) were used to treat ADSCs.
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7

Rat Hippocampal Neuron Epigenetic Regulation

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Rat hippocampal neurons were cultured in 6-well plates at an initial concentration of 2 × 106 cells per well. After culturing for 9–10 days, the neurons were treated with 10 μM manidipine, 5 μM KN-62, or 10 μM H89 for 10 min, or left untreated prior to treatment with 2 mM BHBA for another 1 or 12 h. Subsequently, the cells were lysed using 1× lysis buffer (Beyotime, China) containing protease inhibitor cocktail 2 (Roche, Switzerland) directly in the plates to obtain whole-cell lysates. Proteins were separated on SDS/PAGE gels and electroblotted onto PVDF membranes (GE Healthcare, United States). The membranes were blocked with 5% (w/v) BSA (bovine serum albumin; Sigma-Aldrich, United Kingdom) for 1 h at room temperature, and subsequently incubated with primary antibodies (tri-methyl histone H3 (Lys4) rabbit mAb, ubiquityl-histone H2A (Lys119) rabbit mAb, phospho-CaMKII (Thr286) rabbit mAb, phospho-CREB (SER133) rabbit mAb, WDR5(A-6), anti-BDNF antibody, anti-beta-actin) at 4°C overnight. Then, TBST was used to wash the membranes 3 times, followed by incubation with the horseradish peroxidase (HRP)-conjugated secondary antibody (Abcam, United Kingdom) for 1 h at room temperature. The protein bands were developed using the ImmobilonTM Western Chemiluminescent HRP Substrate (Millipore, United States) and photographed using the FlorChem FC2 System (Alpha Innotech, United States).
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8

Caspase-3 and Caspase-9 Activity Assay

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Caspase-3 and caspase-9 activities were assessed by the colorimetric method using Caspase-3 and Caspase-9 activity assay kits (Beyotime Institute of Biotechnology), respectively, according to the manufacturer's protocol. The cells were counted and washed in PBS. The samples were collected by centrifugation (600 × g; 5 min; 4°C), suspended in 100 µl lysis buffer (Beyotime Institute of Biotechnology) and kept on ice for 20 min. Following centrifugation (20,000 × g; 10 min; 4°C), the supernatant was collected for analysis. A total of 2 mM Ac-DEVD-pNA or Ac-LEHD-pNA was used to measure Caspase-3 activity or caspase-9 activity, respectively. The absorbance was measured at 405 nm using a microplate reader, and Caspase-3 and caspase-9 activity was calculated based on the relative value of p-nitroanilide content.
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9

Western Blot Analysis of Apoptosis Regulators

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Homogenization was conducted using lysis buffer (Beyotime, China). Bradford assay (Bio-Rad, Hercules, CA, USA) was used for protein quantification. SDS-PAGE was used for protein quantification. We used 8–15% Tris-HCl polyacrylamide gels (Bio-Rad) to isolate the proteins, which were transferred to PVDF membranes (Millipore, Bedford, MA) after isolation. Immunoblots were incubated overnight in the presence of primary antibodies (anti-caspase-3, anti-Bcl2, anti-p53, anti-Bax, anti-β-actin, and anti-HIF-1α, all purchased from Cell Signaling Technology, Beverly, MA, USA) in TBST at 4°C. Subsequently, secondary antibodies conjugated to HRP were added to the mixture. ECL plus detection agent (Pierce, Rockford, IL, USA) was used to examine immunoreactive bands. The Omega 16ic Chemiluminescence Imaging System (Ultra-Lum, CA, USA) was used for analysis.
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10

Protein Expression Analysis by Western Blot

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Protein extraction was carried out with a lysis buffer (Beyotime Institute of Biotechnology, Haimen, China). Proteins were quantified by an acid-based Protein Assay Kit (Thermo), followed by separation with 10% sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transfer to polyvinylidene difluoride membranes (Millipore, Bedford, MA, USA). Afterward, 5% skim milk was used to block (2 h) the non-specific binding sites of membranes. Membranes were subsequently incubated with indicated primary antibodies overnight against PD-L1 (1:1000, ab213524, Abcam, Cambridge, UK), FOSL1 (1:1000, ab252421, Abcam), or PTBP1 (1:5000, ab134950, Abcam), followed by incubation with horseradish peroxidase-conjugated secondary antibody (1:5000, ab205718, Abcam). Membranes were washed with PBS three times, and signals were visualized by an ECL reagent (Millipore, Bedford, MA, USA). Protein expression was analyzed using ImageJ software 6.0 (National Institutes of Health, Bethesda, MD, USA). GAPDH (1:2000, ab8245, Abcam) and β-actin (1:5000, ab6276, Abcam) acted as internal controls.
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