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16 protocols using eos digital camera

1

Immunofluorescence Staining of OCT4

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Fixed samples were washed with PBS to remove paraformaldehyde, and then rabbit polyclonal anti–OCT4 antibody (1:1000) (Abcam, USA) in PBST (PBS+0.1% Triton-X) supplemented with 10% normal goat serum was added to each well and incubated overnight at 4°C. After rabbit polyclonal anti-OCT4 antibody was removed and samples were washed with PBS, goat anti-rabbit Alexa-Fluor 568 (1:500) in PBS-Triton supplemented with 10% NGS were added to each well and incubated for 45 min at RT in dark. DAPI (1:500) was also added to goat anti-rabbit Alexa-Fluor 568 solution to counterstain cell nuclei. About 10–15 characteristic pictures/well were taken by a fluorescent microscope (Olympus IX-71) equipped with a Canon EOS digital camera (Canon, Tokyo, Japan). Then, cells were counted after merging images by Adobe Photoshop CS4, and the results were displayed as a percentage of total cells counted.
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2

Quantifying Neuronal and Glial Cell Markers

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Fixed samples were washed with PBS to remove PFA, and then the primary antibody solution containing mouse monoclonal anti-β-III-tubulin (1:1,000) and rabbit polyclonal anti-glial fibrillary acidic protein (GFAP; 1:1,000) in PBST (PBS+0.1% Triton-X) supplemented with 10% normal goat serum (NGS) was added to each well of the 24-well plates and incubated kept for 2 hours at room temperature. After removing the primary antibody and washing samples with PBS, the secondary antibody solution containing goat anti-mouse Alexa-Fluor 488 and goat anti-rabbit Alexa-Fluor 568 (1:500) in PBS-Triton supplemented with 10% NGS were added to each well and incubated for 45 minutes at room temperature in dark. DAPI (1:500) was also added to the secondary antibody solution to counterstain cell nuclei. Using a fluorescent microscope (Olympus IX-71) equipped with a Canon EOS digital camera (Canon, Tokyo, Japan) 10–15 representative pictures/well were taken and cells were counted after merging images using Adobe Photoshop CS4 and the data were presented as a percentage of total cells counted.
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3

Quantifying Soybean Leaf Damage

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The leaf damage produced by the green cloverworms was analyzed in addition to the recovery of cloverworms and spiders to assess the nature of ant-spider intraguild interactions. Following arthropod removal, all soybean stems were snipped at soil level, placed into trash bags (1 per cage), transported to the lab, and stored in a cold room (15 °C) for 12 h until processing (Breene et al. 1990) . A 5 plant sub-sample was blindly and randomly selected out of the bag by hand for every cage. Leaves of each sub-sample were removed from the stem, flattened, placed onto a white background with a scale, and photographed at the same distance and zoom using a Canon EOS digital camera (Canon Inc., Tokyo, Japan). Plant damage was assessed via ImageJ (National Institutes of Health, Bethesda, Maryland, USA) (Rasband 2016) , where each photo was scaled globally using an in-photograph scale. Missing leaf area was measured and calculated as a proportion of the entire leaf area (Schneider et al. 2012; Schindelin et al. 2015) .
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4

Visualizing Fish Skeletal Structures

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Stained fish skeletons were imaged using a Nikon SMZ18 stereomicroscope and NIS-Elements software. Adult fish were anesthetized with Tricaine mesylate (MS-222; 0.04%, Western Chemical Inc.) and photographed using a Canon EOS digital camera. Imaging of live and stained larval fish were performed using a Zeiss LSM 800 confocal microscope and ZEN Blue software or a Nikon SMZ18 stereomicroscope and NIS-Elements software for low magnification images of whole larvae. Larvae were anesthetized with MS-222 and embedded in 0.5% low-melting agarose for imaging. Confocal z-stacks were processed using ZEN blue software.
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5

Quantitative Analysis of Spinal Cord Plaques

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Following deparaffinization and hydration, sections were selected randomly from the lumbar spinal cord and hippocampus. All sections were retrieved by pressure cooker and permeabilized by 20% tween for 20 min for fluorescence immunostaining. The nonspecific area was blocked with 0.1% BSA in 0.1% Triton X-100/PBS for 20 min. The sections were incubated overnight at 4 C with Anti-MBP antibody (1:500, Abcam [ab218011], USA) and Anti-GFAP antibody (1:800, Abcam [ab68428], USA) and Anti-IDO-1 Antibody (1:250, EMD Millipore [MABF850], Germany), as primary antibody, in 0.03% PBS-Triton- × 100 supplemented with 5% normal goat serum (Abcam[ab7481-], USA). The slides were incubated with appropriate secondary antibodies (Alexa Fluor 488 and 566 (1:500, Thermo Fisher Scientific, USA), and Hoechst (1:1000, Abcam [ab228550], USA) for 1 h. Samples were analysed using a fluorescent microscope (Olympus IX-71; Olympus, Tokyo, Japan) equipped with a Canon EOS digital camera. For quantification of plaque number, we used soteriological dissector method for particle number. after preparation of immunohistochemically imaging of spinal cord, two adjust section with mentioned distance compared them (position and plaque size). The plaque with different position were counted. Totally number of each spinal cord plaque calculated for comparison between groups. Area of plaque estimated image J software.
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6

Immunofluorescence Analysis of Glial Cells

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After 5 days, differentiated cultures were used for IF analysis. Cells in 12-well plates were fixed in 2% paraformaldehyde (PFA) for 20 min, washed with PBS, and permeabilized using 20% tween for 20 min, and then blocked in PBS, 2% triton, 5% horse serum (PBSTS) for 20 min. Cells were then incubated overnight with GFAP and MBP primary antibodies (Sigma Aldrich, USA) at 1:800 and 1:500 dilutions, respectively78 . Wells were then washed in PBS and incubated for 1 hour with Alexa Fluor 488 or 568 (1:500 dilution) conjugated anti-mouse or anti-rabbit secondary antibodies, respectively. Representative pictures of each well (10–12 fields/well) were taken using a fluorescent microscope (Olympus IX-71) equipped with a Canon EOS digital camera. Cell counts were then performed and data presented as percent positive cells per treatment condition.
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7

Immunohistochemical Analysis of Neuroinflammation

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The sections were dewaxed, rehydrated, and then immersed into citrate buffer for antigen repair. After that, the sections were blocked with 2% bovine serum albumin and then incubated overnight at 4 °C with the following primary antibodies: anti-iNOS (1:200; Invitrogen, USA), anti-ionized calcium binding adaptor molecule-1 (Iba-1) (1:100, Abcam, USA), anti-Arg-1 (1:200, Santa Cruz Biotechnology, USA), followed by incubation with the secondary antibodies Alex Fluor® 488-labeled secondary antibody (green; 1:1000; Abcam), Alex Fluor® 647-labeled secondary antibody (red; 1:1000; Abcam) and Hoechst (blue; 1:1000) for 1 h at room temperature. Slides were observed by a fluorescent microscope (Olympus IX-71) equipped with a Canon EOS digital camera. The iNOS, Arg-1, and Iba-1 positive cells were separately counted using Image J software.
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8

Immunofluorescence Characterization of Differentiated Cultures

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Differentiated cultures were then used for analysis by immunofluorescence (IF). Cells were fixed for 20 min in 2% paraformaldehyde (PFA) in 12-well plates followed by washing with PBS. Thereafter, cells were permeabilized for 20 min using 20% tween and then blocked for 20 min in PBS, 2% triton, 5% horse serum (PBSTS). Thereafter, cells were incubated overnight with monoclonal antibodies against myelin basic protein (MBP), glial fibrillary acidic protein (GFAP), and β-III tubulin (Sigma Aldrich, USA) at 1:500, 1:800 and 1:700 dilutions, respectively. Following several washes in PBS, wells were incubated for 1 h with Alexa Fluor 488 or 568 (1:500 dilution) conjugated anti-mouse or anti-rabbit secondary antibodies, respectively. Representative pictures of each well (10–12 fields/well) were taken using a fluorescent microscope (Olympus IX-71) equipped with a Canon EOS digital camera. Cells were then counted, and data presented as percent positive cells per treatment condition.
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9

Microscopic Analysis of Cucumber Morphology

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Cucumber fruits with a length of 0.2, 0.35, and 0.6 cm, as well as roots and receptacles, were fixed in FAA and vacuumed for 20 min then dehydrated through a gradient ethanol series (50, 60, 70, 85, 90, 95, and 100 % (v/v)) for every 5 min. They were then subjected to critical-point drying using the Leica EM CPD300 desiccator (Feica, Germany) and gold–palladium coating using the Leica EM SCD050 ion sputter and carbon coating unit (Feica, Germany). Finally, all samples were observed under an ALTO 1000 scanning electron microscope (Gatan, United States). Digital photos of cucumber fruits of different lengths were taken using a Canon EOS digital camera. Microscopy photos were taken using a LECIA DM 2500 microscope.
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10

Immunofluorescence Analysis of Microglia Markers

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The sections were dewaxed, rehydrated, and then immersed into citrate buffer for antigen retrieval. After that, the sections were blocked with 2% bovine serum albumin and then incubated overnight at 4 °C with the following primary antibodies: anti-ionized calcium binding adaptor molecule-1 (Iba-1) (1:100; Abcam, Cambridge, MA, USA), anti-CD68 (1:200; Santa Cruz Biotechnology, Dallas, TX, USA), anti-CD206 (1:200; Santa Cruz Biotechnology), anti-P2X7 (1:200; Invitrogen, Thermo Fisher Scientific, Inc., Waltham, MA, USA), anti- microtubule-associated protein 2 (MAP2; 1:200; Abcam), anti-CD11b (1:200; Abcam), followed by incubation with the secondary antibodies Alex Fluor® 488-labeled secondary antibody (green; 1:1000; Abcam), Alex Fluor® 647-labeled secondary antibody (red; 1:1000; Abcam) and DAPI (blue; 1:1000; Santa Cruz Biotechnology) for 1 h at room temperature. Slides were observed by a fluorescent microscope equipped with a Canon EOS digital camera.
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