For time-lapse live imaging, the bacterium Rhodococcus jostii RHA1 stained by LipidTOX Red was grown on a gel surface (2% agarose dissolved in MSM), and the gel was covered by a cover glass. The bacteria were then observed with Olympus FV1200 confocal microscope at 30°C for several hours. Images were collected images at 10-min interval, and the representative images as indicated time were shown.
For three-dimensional (3D) imaging and tomography, the samples were prepared according to previous report [17] , and bacteria were observed by Olympus FV1200 confocal microscope with 3D model. Images were collected images at 10-nm interval, and around 40 images in total for one field were collected. Then these images were analyzed using Imaris 8.1.2 software.