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4 protocols using hpa013144

1

Immunofluorescence and Western Blot Analysis of ORP1L

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Rabbit monoclonal anti-ORP1L for immunofluorescence (1:100) was a kind gift from V. Olkkonen (University of Helsinki, Helsinki, Finland); rabbit polyclonal anti-ORP1L for western blots (1:2000; Abcam, ab36983, Lot: GRT56186–1); goat polyclonal anti-VAPA (K-15) (1:50; Santa Cruz Biotechnology, sc-48698, Lot: K2515); rabbit monoclonal anti-VAPB (1:200; Sigma, HPA013144, Lot: A47637); mouse monoclonal anti-GAPDH (1:5000; Millipore, MAB374, Lot: 3090497); anti-GST (1:3000; Proteintech, 660001–2-Ig); rabbit IgG fraction to SRBC (MP Biosciences, 0855806); mouse IgG to HRBC (Mybiosource, MBS8502309); washed and preserved SRBC (MP Biosciences, 0855876); PIP strips (Echelon, Salt Lake City, UT); Sheep erythrocytes (10% suspension) were purchased from MP Biomedicals. Fluorescent antibodies against mouse and rabbit were from Jackson ImmunoResearch Labs. Paraformaldehyde (16% w/v) was from Electron Microscopy Sciences. GA3-AM was a kind gift by Tasuku Ueno (University of Tokyo, Tokyo, Japan).
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2

Protein Extraction and Western Blot Analysis

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Soft tissues and periosteum were removed from mice femora by microsurgery forceps under the dissecting microscope. Diaphyses were extracted, and bone marrow was flushed away. Femoral diaphyses were then crushed using a mortar and pestle in liquid nitrogen. Both bone and cellular proteins were extracted by incubating in radioimmunoprecipitation assay lysis buffer containing protease inhibitor (Roche) and a phosphatase inhibitor cocktail (Sigma-Aldrich) for 30 min at 4°C. Clarified bone and cell lysate (obtained by centrifugation at 16,000g for 20 min at 4°C) were diluted with 4× SDS sampling buffer and boiled for 5 min. For each sample, 4 μg of protein was fractionated on 10 to 17.5% SDS–polyacrylamide gel electrophoresis gel and transferred to a nitrocellulose membrane (Millipore). Membranes were incubated with primary antibodies, including β-actin JLA20 antibody (1:5000; Developmental Studies Hybridoma Bank), Mfn2 antibody (1:1000; 9482, Cell Signaling Technology), or VAPB antibody (1:1000; HPA013144, Sigma-Aldrich), and the corresponding horseradish peroxidase–conjugated secondary antibodies. Proteins were visualized by enhanced chemiluminescence and autoradiography (FujiFilm LAS-3000/4000 Gel Documentation System, Japan).
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Immunohistochemical Analysis of Neurodegeneration Markers

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Four‐micrometer‐thick sections of the basal ganglia, midbrain, pons, medulla oblongata, and cerebellum were cut and subjected to immunohistochemical processing using the avidin‐biotin‐peroxidase complex (ABC) method with a Vectastain ABC kit (Vector, Burlingame, CA, USA). Antibodies against phosphorylated α‐Syn (p‐α‐Syn) (#64; Wako, Osaka, Japan; 1:5000) and VAPB (HPA013144; Sigma, St. Louis, MO, USA; 1:250) were used as primary antibodies. The sections were pretreated in an autoclave for 10 min in 10 mM citrate buffer (pH 6.0) for antigen retrieval. For p‐α‐Syn immunohistochemistry, the sections were additionally pretreated in 98% formic acid for 5 min. Diaminobenzidine was used as the chromogen. The sections were counterstained with hematoxylin.
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4

ACBD5 Plasmid Cloning and Antibodies

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All plasmids were cloned and amplified using DH5α Competent Cells (Invitrogen, Cat. No. 18265–017). The plasmids encoding EGFP-SKL, myc-ACBD5(human), FLAG-ACBD5(human)-FFAT, ACBD5(human)-ACB and FLAG-ACBD5(human)-WT were generated as described in a previous publication (16). The plasmids mCherry2-C1, mPlum-N1, mPlum-Mito-3 and mCherry-Mito-7 were gifts from Michael Davidson (Addgene plasmid #54563, #54629, #55988, #55102) [20 ]. The primary and secondary antibodies used in this study include mouse monoclonal anti-GFP (MAB3580, Chemicon), mouse monoclonal anti-myc (#2276, Cell signaling), rat monoclonal anti-RFP (5F8, Chromotek), rabbit polyclonal Pex14 (kind gift from D. Crane, Brisbane, Australia), rabbit polyclonal ACBD5(human) (HPA012145, Sigma), rabbit polyclonal VAPB (HPA013144, Sigma), Alexa Fluor 488 anti-mouse IgG, Alexa Fluor 568 anti-rat IgG and Alexa Fluor 647 anti-rabbit (A32723, A11036, A32733, Invitrogen).
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