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24 protocols using be0003 1

1

Depleting CD8+ and CD4+ T cells

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C57BL/6 and ApoE−/− mice were administered anti-CD8 antibody (Bio X Cell; #BP0060) and anti-CD4 antibody (Bio X Cell; # BE0003-1) via intraperitoneal injection at 200 μg/mouse three times weekly. Control mice were administered IgG2b isotype control (Bio X Cell; #BE0090).
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2

Depletion of T-cells for Lung Tumor Analysis

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For T-cell depletion, four days before switching from normal diet to the Dox diet to systemically inhibit Atg5 expression, anti-CD4 (clone GK1.5; BE0003-1, BioXCell), anti-CD8 (clone 2.43; BE0061, BioXCell), or control IgG2b (clone LTF-2; BE0090, BioXCell) antibodies were intraperitoneally injected into KP lung tumor bearing rtTA;shRNA-Atg5, and WT-Atg5 mice, every 5 days for 3 weeks. Subsequently, mice were euthanized, and lung lobes were collected for tumor burden analysis.
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CD4+ T Cell Depletion in Mice

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Mice were depleted of CD4+ T cell subsets via intraperitoneal administration of anti-CD4 (GK1.5, rat IgG2b) antibody (BE0003-1; BioxCell). Each mouse received 200 μg of GK1.5 or isotype (LTF-2, rat IgG2b) control (BE0090-A050MG; BioxCell) antibody in a volume of 200 μl PBS 9 days prior to the first vaccination and weekly thereafter during the observation period. Efficient depletion was confirmed by measuring the prevalence of CD4+ T cells in blood samples by flow cytometry on the day before the first vaccination (day −43) and the day before challenge (day −1). The depletion was also confirmed by measuring the prevalence of CD4+ T cells in bronchoalveolar lavage fluid (BALF) and lung tissues by flow cytometry at the endpoint of the experiment. The anti-CD4 antibodies used for flow cytometric analysis bind to the epitope of the CD4 protein at locations distinct from GK1.5. The RM4-4 fluorescein isothiocyanate (FITC) rat anti-mouse CD4 antibody (553055; BD Biosciences) was used for blood sample flow cytometric analysis, while the CD4 RM4-5 BV421 rat anti-mouse CD4 antibody (100543; BD Biosciences) was used for BALF and lung tissue flow cytometric analysis.
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4

Dengue Virus T Cell Depletion

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C57BL/6 mice were infected i.p. with 5 × 105 PFU of DENV-1 and were administered anti-CD8 mAb (Clone 2.43 (anti-Lyt2.2), BioXCell Cat# BE0061 RRID:AB_1125541) and/or anti-CD4 mAb (Clone Gk1.5 (anti-L3T4), BioXCell Cat# BE0003–1 RRID:AB_1107636) i.p. three days before DENV-2 challenge (daily doses of 100 μg of mAb on days 57, 58, and 59 post-primary infection). C57BL/6 control mice were inoculated i.p. with an isotype control mAb, using the same inoculation scheme. CD8+ and CD4+ T cell depletion was confirmed by flow cytometry using anti-CD8 FITC and anti-CD4 FITC antibodies (BD Biosciences). Sixty days after primary infection with DENV-1, all mice were challenged i.p. with 1 × 106 PFU of DENV-2.
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5

T Cell Depletion in Tumor Therapy

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The dose of PIP-CpG was 18.2 nmol (250 μg) and was administered IV via tail vein in 100 μL PBS. For T cell depletion, anti-CD4 (100 μg; BioXCell: BE0003–1; clone GK1.5, rat IgG2b) and anti-CD8a (100 μg; BioXCell: BE0061; clone 2.43, rat IgG2b) antibodies were injected intraperitoneally 2 days before therapy, on the day of the first treatment, and at 6, 13, and 20 days post-treatment. T cell depletion in blood was validated by flow cytometry. Treatments (vehicle or PIP-CpG) and tumor growth measurements were initiated when tumor(s) became palpable (typically around 50 days old; usually 2–3 tumors per mouse). For all experiments, mice were methodically assigned to treatment groups to ensure mice in different groups were well-matched on the first day of treatment (i.e. similar number of tumors, total tumor burden, age). The size of each tumor, expressed as volume (length × width × height), was monitored continuously with digital calipers (Mitutoyo) until the euthanasia end point was reached (criteria: when any tumor reached 1.5 cm in the largest diameter). Mice were naired regularly to facilitate tumor measurements. To minimize potential confounders, mice from different treatment groups were housed together.
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6

Murine Tumor Model with Combination Therapy

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9464D or Neuro2A (ATCC, Manassas, VA, USA) Nb cells were grown in Dulbecco's modified Eagle medium (DMEM) with 10% FBS, 1% nonessential amino acids (NEAA), and 55 µm β‐mercaptoethanol. 1E6 cells in 100 µL PBS were inoculated subcutaneously into the mouse flank, and tumor sizes were monitored two to three times weekly using calipers. Tumor volumes were estimated as length × width × height × π/6. Mice were euthanized when tumors reached 2.0 cm in maximal linear dimension. Anti‐murine PD‐1 antibody (Bio‐X‐Cell, Lebanon, NH, USA; #BE0278) was given intraperitoneally (i.p.) twice weekly at 100 µg per dose for 2 weeks, beginning on day 32. Azacytidine (Sigma, St. Louis, MO, USA; 0.5 mg·kg−1 i.p.) and ITF‐2357 (APExBIO, Houston, TX, USA; 2 mg·kg−1 i.p.) were given 5 days per week on alternating weeks, beginning on day 33. Anti‐CD4 antibody (Bio‐X‐Cell, BE0003‐1), anti‐CD8 antibody (Bio‐X‐Cell, BE0223), or their combination was given i.p. twice weekly at 100 µg per dose for each antibody beginning on day 21 and continued thereafter.
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7

Immune-Related Tumor Delay Study

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In order to study whether effects on primary tumor delay were immune related, in a second experiment, mice were treated with anti-CD4 and anti-CD8 antibodies (BE0003–1 and BP0004–1, BioXcell, NH, USA). Depletion of CD4+ and CD8+ T-cell subsets was done by i.p. injections at 100 μg/mouse on the 4th, 5th and 6th day after tumor inoculation and subsequently on every 6th day until sacrifice as was described by Demaria et al. [18 ].
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8

CD4 Depletion and HER3-DC1 Immunotherapy in TUBO Tumor Model

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BALB/c mice were injected intraperitoneally with monoclonal CD4 depletion antibody [InVivoMAb, anti-mouse CD4 (GK1.5); cat. #BE0003-1, Bio X Cell; RRID:AB_1107636; 300 μg/mouse] starting 3 days before subcutaneous TUBO tumor cell injection (250,000 cells/mouse) and was continued twice a week until endpoint. When tumors were palpable, mice were randomized into two groups. One group of mice continued receiving CD4 depletion antibody only, and the other group received once-weekly intratumoral HER3-DC1 (1 × 106 cells/mouse, in 50 μL PBS) along with CD4 depletion antibody. Another group of TUBO tumor–bearing mice received intratumoral HER3-DC1 only, and the control group of mice received PBS intratumorally. Tumor growth was measured with caliper and recorded every 2 to 3 days, and tumor area was determined by the formula length × width (mm2).
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9

Boosting BALB/c Mice Immunity

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BALB/c mice were vaccinated using a double-boost method with either iFLU + Alum or iCoV2 + Alum. To increase the power of individual experiments, after vaccination using the prime-boost method (Mouse vaccination and challenge model, Methods), mice were subsequently administered a third dose of the same vaccine (see Fig. 4; iCoV2 + Alum double-boost group exhibits higher magnitude and lower variability in some disease parameters). At 4 weeks post-second boost vaccination, anti-CD4 monoclonal antibody (GK1.5; BE0003-1, BioXCell) or isotype control monoclonal antibody (LTF-2; BE0090, BioXCell) were administered to mice via intraperitoneal injection in 250 μL of PBS at day -5 (500 μg per mouse), day -3 (250 μg per mouse), and day 2 (125 μg per mouse) relative to challenge at day 0 with SHC014.
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10

Antibody-mediated Immune Modulation in Mice

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Mouse-specific antibodies were obtained from Bio X Cell including anti-mouse PD-1 (RMP1–14, Catalog #BE0146) and anti-mouse 4-1BB (LOB12.3, Catalog # BE0169). For PD-1 and 4-1BB antibody treatments, 200 μg of each antibody was diluted with PBS for a total injection volume of 200 μL. Mice received intraperitoneal (IP) injections of antibody every 3 days, starting on day 9 after tumor implantation, for a total of 3–4 treatments. Control treatments consisted of 200 μL PBS. CD8 and CD4 depletion was performed as described previously (26 (link)). In brief, CD8 or CD4 T cells were depleted via IP injection of 200ug anti-CD8 (53–6.7, BioXCell Catalog #BE0004) or 200ug anti-CD4 (GK1.5, BioXCell Catalog #BE0003–1) at day 5, 6, 7, and 14 following tumor implantation for early CD8 depletion or at day 12, 13, and 14 for late-start CD8 depletion.
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