The largest database of trusted experimental protocols

6 protocols using pro q diamond

1

Phosphorylation of N-Terminal Pyrin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Myc/his-tagged WT or S208A/S242A mutant N-terminal pyrin (aa’s 1- 330) was overexpressed into 293T cells, and the N-terminal pyrin proteins were purified using His-SpinTrap (28-4013-53, GE Healthcare). Each purified N-terminal pyrin protein was incubated with 5 μg of PKN1 (PR7255B) or PKN2 (PR7370A, Thermo Scientific) at 30°C for 0.5h in a kinase buffer (50 mM HEPES pH7.5, 0.01% BRIJ-35, 10 mM MgCl2, 1 mM EGTA, 500 μM ATP and 2.5 mM DTT). The reactants were analyzed by immunoblotting with anti-phospho-Ser antibody (9606, Cell Signaling) or staining with Pro-Q diamond (P33300, Invitrogen). Pro-Q diamond-stained gel was visualized on Molecular Imager FX (Bio-Rad).
+ Open protocol
+ Expand
2

Phosphorylation of N-Terminal Pyrin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Myc/his-tagged WT or S208A/S242A mutant N-terminal pyrin (aa’s 1- 330) was overexpressed into 293T cells, and the N-terminal pyrin proteins were purified using His-SpinTrap (28-4013-53, GE Healthcare). Each purified N-terminal pyrin protein was incubated with 5 μg of PKN1 (PR7255B) or PKN2 (PR7370A, Thermo Scientific) at 30°C for 0.5h in a kinase buffer (50 mM HEPES pH7.5, 0.01% BRIJ-35, 10 mM MgCl2, 1 mM EGTA, 500 μM ATP and 2.5 mM DTT). The reactants were analyzed by immunoblotting with anti-phospho-Ser antibody (9606, Cell Signaling) or staining with Pro-Q diamond (P33300, Invitrogen). Pro-Q diamond-stained gel was visualized on Molecular Imager FX (Bio-Rad).
+ Open protocol
+ Expand
3

Quantitative 2-DE Protein Profiling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The 2-DE images from gels stained with Pro-Q Diamond and SYPRO Ruby fluorescent dyes were captured with the Gel Doc XR+ Imaging System (Bio-Rad Laboratories). Analysis of digitalized gel images was performed with PDQuest Advanced software v. 8.0.1 (Bio-Rad Laboratories). Protein volumes of detected and matched spots over biological replicates were measured following subtraction of background noise and total valid spot normalization. Automatic spot analysis by PDQuest software was manually validated. Only protein spots reproducibly detected in at the least two of four biological replicates were selected for image analyses. The observed isoelectric point (pI) value of protein spots was determined from their gel position relative to focused strips of linear pH gradient, whereas molecular mass markers ranging from 15 to 200 kDa (Fermentas, Ontario) were used to assess the observed molecular mass (Mr). Protein fragments were identified by comparing the Mr observed on 2-DE gels with the theoretical Mr of the full-length sequence and they were excluded from further analysis.
+ Open protocol
+ Expand
4

Phosphorylation Analysis of Myofilament Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
To analyze the phosphorylation status of the myofilament proteins cMyBPC and cTnI, we used the dual staining system ProQ-Diamond/SYPRO-Ruby (Thermo Fisher Scientific) according to manufacturers’ instructions. Homogenized LV samples were separated on 4–15% CriterionTMTGXTM precast gels (BioRad, Munich, Germany) and stained with ProQ-Diamond for 1 h and subsequently with SYPRO Ruby overnight. Proteins were visualized using the ChemiDoc imaging system (BioRad). Stained protein bands were quantified via densitometry using the Multi Gauge V3.2 software (FUJIFILM Corp, Minato, Tokyo, Japan). Phospho-signals on ProQ-Diamond-stained gels were normalized to the corresponding myosin heavy chain (MHC) total protein signal on SYPRO-Ruby stained gels.
+ Open protocol
+ Expand
5

Protein Labeling Efficiency Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To examine labeling efficiency, 20 μg of protein lysate was incubated with 30 μM DBCO-TAMRA/PBS (pH 7.4) for 1 h at room temperature. Samples were boiled in Laemmli buffer and run on SDS-PAGE gels. Electrophoresed samples were visualized using the ChemiDoc imaging system (Bio-Rad) with Pro-Q Diamond filters (absorbance/emission of 548/562 nm). The gel was subsequently stained with Imperial stain (Coomassie dye R-250, Thermo Fisher 24615) according to the manufacturer’s recommendation and visualized on the ChemiDoc imaging system. Densitometric quantification of Coomassie blue and TARMA-alkyne stained SDS-PAGE gels was performed with Image Lab (version 6.0. Bio-Rad).
+ Open protocol
+ Expand
6

Phosphorylation Profiling of Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gels were stained for phosphorylated protein using Pro-Q Diamond (Invitrogen, Carlsbad, CA) according to manufacturer recommendations. Gels were immersed in fixing solution (50% methanol and 10% acetic acid) and incubated twice at room temperature with gentle agitation for 30 min. Fixed gels were then immersed in ultrapure water in order to remove all the methanol and acetic acid. Pro-Q Diamond phosphoprotein gel stain was used to stain the gels for 2 h in the dark, followed by destaining in destaining solution (20% acetonitrile, 50 mM sodium acetate [pH 4]) for 30 min 3 times. Gels were washed with ultrapure water 2 times before they were imaged (532 nm laser; excitation: 555 nm; emission: 580 nm) using a TyphoonTM FLA 9500 biomolecular imager (GE Healthcare). After gel imaging, gels were stained with Sypro Ruby Protein gel stain (Invitrogen, Carlsbad, CA) overnight in the dark and were transferred to a clean container, where they were destained twice with destaining solution (10% methanol, 7% acetic acid) for 30 min and rinsed with ultrapure water. Gels were then imaged (473 nm laser; excitation: 450 nm; emission: 610 nm) utilizing a TyphoonTM FLA 9500 biomolecular imager (GE Healthcare). Gel images stained with Pro-Q Diamond and Sypro Ruby were analyzed using PDQUEST software (Bio-Rad Laboratories Inc.).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!