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P nitrophenyl α d galactopyranoside

Manufactured by Merck Group
Sourced in United States

P-nitrophenyl-α-D-galactopyranoside is a synthetic compound used as a substrate in various biochemical and analytical applications. It is a colorless, crystalline solid that undergoes a color change upon enzymatic hydrolysis, making it a useful tool for detecting and quantifying specific enzymes in a sample.

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10 protocols using p nitrophenyl α d galactopyranoside

1

Characterization of Mannose-based Polysaccharides

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Mannobiose (M2), mannotriose (M3) and mannotetraose (M4) standards were purchased from Megazyme (Bray, Ireland). Locust bean gum (LBG), solka floc, glucose, mannose, guar gum, p-nitrophenyl-α-d-galactopyranoside, p-nitrophenyl-β-d-glucopyranoside, p-nitrophenyl-β-d-mannopyranoside, p-nitrophenol (pNP) and other chemicals were sourced from Sigma-Aldrich, USA. Copra meal was obtained from Parker Biotech Private Ltd., Tamil Nadu, Chennai, India. Food-grade konjac gum (glucomannan) was obtained from New Foods, Bloomingdale, Illinois, USA. Fenugreek seed (Trigonella foenum-graecum) meal, Aloevera pulp, rice husk, wheat straw and wheat bran were purchased from local markets.
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2

Extracellular α-Galactosidase Activity Assay

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Extracellular α‐galactosidase assay was performed to determine the expression level of the Mel1p, as described previously (Diep et al. 2006 (link)). Yeast strains were grown in synthetic complete medium containing gly/lac up to saturation. The cultures were then subcultured in synthetic complete media containing 2% galactose to an initial OD of 0.05. The cultures were then allowed to grow till an OD of 1.00. A volume of 1 mL of each culture was centrifuged and extracellular α‐galactosidase activity of the supernatant was determined as follows. A total of 120 μL of the supernatant was mixed with 360 μL of assay buffer (2 volumes of 0.5 m sodium acetate, pH 4.5, and 1 volume of 100 mm p‐nitrophenyl α‐d‐galactopyranoside [Sigma]). The reaction was incubated at 30°C for 5 h and terminated by adding 520 μL of stop buffer (1 M sodium carbonate). Enzyme amounts were then determined by measuring the absorbance at 410 nm. Triplicate samples were taken for the analysis and results represent average of at least three independent experiments with standard deviation.
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3

Regulation of STAT3 Signaling and Apoptosis

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The restriction enzymes were obtained from New England Biolabs (Beijing, China). p-nitrophenyl α-D-galactopyranoside, guggulsterone, CDCA, yeast nitrogen base without amino acids, dimethyl sulfoxide (DMSO) and glucose were all purchased from Sigma (Shanghai, China). The dropout supplement free from leucine and tryptophan (-Leu/-Trp DO supplement) and quantitative real-time PCR kit were bought from Takara (Dalian, China). Dulbecco's modified Eagle's Medium (DMEM) and fetal bovine serum (FBS) was from Gbico (Shanghai, China). 293Fect was purchased from Pregene (Beijing, China). Dual-Luciferase Reporter Assay System was obtained from Promega (Beijing, China). RNA extraction reagent and reverse transcription kit were purchased from Toyobo (Shanghai, China). Rabbit anti-phosphorylated-STAT3, rabbit anti-total-STAT3 and caspase9 were from Bioworld Technology, Inc (Nanjing, China). GAPDH antibody was obtained from Kangcheng Bio-tech (Shanghai, China). All NSAIDs were purchased from Sigma.
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4

Lipid analogs and enzyme assays

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N-Dodecanoyl-NBD-ceramide trihexoside and N-dodecanoyl-NBD-D-erythro-dihydrosphingosine lipid analogs were purchased from Matreya (Pleasant Gap, PA, USA). 2,2-didecylpropane-1,3-bis-β-D-maltopyranoside (NG310) detergent was purchased from Anatrace (Maumee, OH, USA). Egg white lysozyme (BP535–1), BS3 (bis(sulfosuccinimidyl)suberate crosslinker (A39266), IANBD amide (N,N’-dimethyl-N-(iodoacetyl)-N’-(7-nitrobenz-2-oxa-1,3-diazol-4-yl)ethylenediamine) (D2004), and the Amplex Red galactose assay (A22179) were purchased from ThermoFisher Scientific (Waltham, MA, USA). The synthetic α-galactosidase substrate p-nitrophenyl-α-D-galactopyranoside (N0877) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Human acid α-glucosidase was a gift from Genzyme (Cambridge, MA, USA). Sodium malonate was purchased from Hampton Research (Aliso Viejo, CA, USA).
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5

Glycan Standards for Enzymatic Assays

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Man9GlcNAc2 and GlcMan9GlcNAc2 were purchased from Dextra Laboratories. Man9GlcNAc2-Asn and Man5GlcNAc2-Asn were prepared by enzymatic digestion of soybean agglutinin isolated from soybean flour with subsequent chromatographic purification following a previously described procedure20 (link). Disaccharides, α-1,2-, α-1,3- and α-1,6-mannobiose, were purchased from Carbosynth. The monosaccharides mannose, fructose, glucose and xylose were purchased from Sigma-Aldrich. Xylobiose, xylotetraose and xylohexaose were purchased from Megazyme. Synthetic substrates p-nitrophenyl-α-d-mannopyranoside, p-nitrophenyl-α-d-glucopyranoside, p-nitrophenyl-α-d-galactopyranoside, p-nitrophenyl-α-d-xylopyranoside, p-nitrophenyl-α-l-arabinofuranoside, p-nitrophenyl-α-l-arabinopyranoside and p-nitrophenyl-α-d-fucopyranoside were purchased from Sigma-Aldrich.
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6

Gut Microbiota Glycolytic Enzyme Assay

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The activity of the gut microbiota was assessed based on the glycolytic activities of 5 bacterial enzymes in the cecal digesta including, α-glucosidase, β-glucosidase, α-galactosidase, β-galactosidase, and β-glucuronidase. Before the analysis, the digesta was thawed at 4°C for 3 h. The activity of the enzymes was determined spectrophotometrically according to Konieczka and Smulikowska, modified from Jurgoński et al. (Jurgoński et al., 2013 (link); Konieczka and Smulikowska, 2018 (link)). To determine each specific enzyme we used: p-nitrophenyl-α-D-glucopyranoside for α-glucosidase, p-nitrophenyl-β-D-glucopyranoside for β-glucosidase, p-nitrophenyl-α-D-galactopyranoside for α-galactosidase, p-nitrophenyl-β-D-galactopyranoside for β-galactosidase, and p-nitrophenyl-β-D-glucuronide for β-glucuronidase (Sigma Chemical Co., St. Louis, MO).
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7

Evaluation of Radix Alba Paeoniae

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Dried Radix Alba Paeoniae was purchased from Anqing Chunyuan pharmacy in Anqing city, Anhui province, China on June 2021. Analytic-grade chloroform, ethyl acetate, and n-butanol and chromatographic-grade acetonitrile and formic acid were from Aladdin Reagent Int. (Shanghai, China). Metformin, acarbose, 1,1-diphenyl-2-picrylhydrazyl (DPPH), 2,2-azinobis-(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS), α-glucosidase, and p-nitrophenyl-α-D-galactopyranoside (pNPG) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Human hepatocellular carcinoma cells (HepG2) and culture media were purchased from the BeNa Culture Collection (Beijing, China). All other chemicals were of analytical grade and from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
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8

Extracellular α-galactosidase Activity Assay

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Extracellular α-galactosidase assay was performed to determine the expression level of the Mel1p, as described previously (Diep et al. 2006 (link)). Yeast strains were grown in synthetic complete medium containing gly/lac up to saturation. The cultures were then subcultured in synthetic complete media containing 2% galactose to an initial OD of 0.05. The cultures were then allowed to grow till an OD of 1.00. A volume of 1 mL of each culture was centrifuged and extracellular α-galactosidase activity of the supernatant was determined as follows. A total of 120 μL of the supernatant was mixed with 360 μL of assay buffer (2 vol-umes of 0.5 m sodium acetate, pH 4.5, and 1 volume of 100mm p-nitrophenyl α-D-galactopyranoside [Sigma]). The reaction was incubated at 30°C for 5 h and terminated by adding 520 μL of stop buffer (1 M sodium carbonate). Enzyme amounts were then determined by measuring the absorbance at 410 nm. Triplicate samples were taken for the analysis and results represent average of at least three independent experiments with standard deviation.
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9

Bacterial Glycolytic Enzyme Activities

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The glycolytic activities of bacterial enzymes in the ileal and cecal digesta—α- glucosidase, β-glucosidase, α-galactosidase, β-galactosidase, and β-glucuronidase—were determined spectrophotometrically according to a previously reported protocol by Konieczka and Smulikowska [34 (link)]. The following substrates were used: p-nitrophenyl-α-D-glucopyranoside for α-glucosidase, p-nitrophenyl-β-D-glucopyranoside for β-glucosidase, p-nitrophenyl-α-D-galactopyranoside for α-galactosidase, p-nitrophenyl-β-D-galactopyranoside for β-galactosidase, and p-nitrophenyl-β-D-glucuronide for β-glucuronidase (Sigma Chemical Co., St. Louis, MO, USA).
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10

Biotin-Avidin Affinity Assay Reagents

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Streptavidin (from Streptomyces avidinii, affinity purified, ≥13 U mg -1 of protein), Concanavalin A (Con A) from Canavalia ensiformis, (3-methacryloxypropyl)-trimethoxysilane (γ-MAPS), ethylene dimethacrylate (EDMA), glycidyl methacrylate (GMA), acrylamide, N,N'-Methylenebis(acrylamide) (MBA), acrylamide (AA), 1-propanol, 1,4-butanediol, dimethyl sulfoxide (DMSO), sodium periodate, lithium hydroxide, dipotassium hydrogen phosphate (K2HPO4), o-phosphoric acid, sulfuric acid, sodium cyanoborohydride, triethylamine (TEA), azobis(isobutyronitrile) (AIBN), 4′-Hydroxyazobenzene-2carboxylic acid (HABA), p-nitrophenyl-α-D-mannopyranoside (PNM), p-nitrophenyl-α-Dglucopyranoside (PNG) and p-nitrophenyl-α-D-galactopyranoside (PNGal) and ligands (Table S1) were purchased from Sigma-Aldrich (L'Isle d'Abeau Chesne, France). All aqueous solutions were prepared using >18 MΩ deionized water. Phosphate buffer was prepared by dissolving 1.17 g of K2HPO4 in 100 mL of ultrapure water and the pH was adjusted to 7.4 with phosphoric acid.
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