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N glycosidase a

Manufactured by Roche

N-Glycosidase A is an enzyme used in the laboratory for the removal of N-linked glycans from glycoproteins. It catalyzes the hydrolysis of the bond between the asparagine residue and the first N-acetylglucosamine of the N-linked glycan.

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2 protocols using n glycosidase a

1

Glycoprotein Detection in rhTSG-6 Enzymatic Assay

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N-Glycosidase A (5 mU; Roche Life Science, Indianapolis, IN) was diluted with 100 mM sodium acetate buffer (pH 5.0) to a concentration of 0.25 mU per 16 μl. rhTSG-6 (1.2 μg) was added, the sample volume was increased to 20 μl with the enzyme diluent, and it was incubated at 37°C for 15, 60, and 180 min. Half of the reaction solution was separated by 10% SDS-polyacrylamide electrophoresis and stained with Coomassie Brilliant Blue solution. The remainder was separated by 10% SDS-polyacrylamide electrophoresis and transferred to nitrocellulose (NC) membrane for staining glycoproteins (Pierce Glycoprotein Staining Kit; cat. # 24562; Thermo Scientific, Rockford, IL). In brief, the NC membrane was immersed in 10 ml 3% acetic acid for 10 min and then transferred to 10 ml of oxidizing solution. After 15 min gentle agitation, the membrane was washed with 10 ml of 3% acetic acid solution for 5 min three times. The membrane was soaked in 10 ml of Glycoprotein Staining reagent for 15 min and then transferred to 10 ml of Reducing Solution and gently washed with 3% acetic acid for 5 min three times. To visualize the stained bands, the membrane was washed with ultrapure water. The stained membrane was stored in 3% acetic acid solution.
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2

Glycoprotein N-Glycan Analysis by Mass Spectrometry

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N-Linked oligosaccharides were analyzed using a glycoblotting-based method, as described previously (Nishimura et al., 2004) . Purified hemocyanin (0.1 mg) was reduced and alkylated in the presence of a detergent and then digested by trypsin. N-Glycans of glycopeptides were released from trypsindigested samples by incubation with N-glycosidase F (New England Biolabs) or N-glycosidase A (Roche Applied Science) and then specifically captured on BlotGlyco H beads via hydrazone bonds. The glycans blotted on beads were purified using the Mass PREP HILIC mElution Plate (Waters) and subjected to MALDI-TOF mass spectrometry (MS) analysis using an Ultraflex time-of-flight mass spectrometer III (Bruker Daltonics) in reflector positive ion mode with 2,5-dihydroxylbenzoic acid as a matrix. The detected N-glycan peaks in MALDI-TOF MS spectra were chosen using FlexAnalysis v. 3 software (Bruker Daltonics). The intensity of the isotopic peaks of each glycan was normalized to a 10-pmol internal standard (A2 amide glycan). Glycan structures were determined using the GlycoMod Tool (http://web.expasy.org/glycomod/) and the GlycoSuite website (http://unicarbkb.org/).
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