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19 protocols using pelco biowave pro

1

Striatal Axon Ultrastructural Analysis

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Animals were perfused with modified Karnovsky’s fixative (2% paraformaldehyde/2.5% glutaraldehyde) in phosphate buffer, pH 7.4. The brain was dissected and stored in postfix until embedding. Striatal tissue was isolated from 1mm coronal slices between 1.00 and −0.40 of Bregma. Tissue was postfixed in 1% osmium tetroxide, dehydrated in graded acetone, and resin embedded in Embed 812 (Electron Microscopy Services) using a PELCO BioWave Pro tissue processor (Ted Pella). Striatal pieces were oriented such that sections could be cut in a coronal plane to visualize myelinated axon fibers. Ultrathin sections (80 nm) were mounted on copper grids, stained with uranyl acetate and lead citrate, and viewed at 80 kV on a Tecnai G2 transmission electron microscope (FEI).
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2

SEM Imaging of L. johnsonii N6.2

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L. johnsonii N6.2 cultures were fixed with Trump’s fixative solution (VWR, USA), placed onto 0.2 μm polycarbonate membrane and processed by Pelco BioWave Pro laboratory microwave (Ted Pella, Redding, CA, USA). The samples were washed three times with PBS (pH= 7.2), post-fixed with 1% buffered osmium tetroxide. After the post-fixation step, the samples were washed with distilled water and dehydrated with a graded ethanol series (25%, 50%, 75%, 95%, 100%). The final step was to preserve the surface structures of the samples by drying them in a critical point dryer (Autosamdri-815, Tousimis Research Corp, Rockville MD, USA). The samples were mounted on carbon adhesive tabs on aluminum specimen mounts and Au/Pd sputter coated (DeskV Denton Vacuum, Moorestown, NJ, USA). Digital micrographs were acquired by field-emission scanning electron microscope (SU-5000, Hitachi High Technologies America, Inc. Schaumburg, IL, USA).
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3

Leaf Cell Wall Staining Protocols

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For calcofluor white staining, the second leaf blades were fixed in Dietrich’s Formalin Acetic Acid (FAA) overnight at 4 °C. Fixed samples were processed with the aid of a Pelco BioWave Pro laboratory microwave (Ted Pella). Samples were dehydrated in a graded ethanol series, from 75%, 85%, 95%, to 100%. Dehydrated samples were infiltrated in LRWhite Hard resin at 50% then at 100% and cured at 100 °C for 24 h. Semi-thick sections (500 nm) were stained with Calcofluor-white (Sigma) for one minute followed by mounting sections to slides with Depex mounting medium and viewing under UV using an Olympus BX 51 upright fluorescence microscope.
For lignin staining, hand-cut specimens prepared from leaf blades were incubated in 2% (w/v) phloroglucinol-HCl for 5 min and viewed using an Olympus BX 51 upright fluorescence microscope.
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4

Maize Leaf Fixation and Embedding

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Maize plants were grown in a greenhouse under standard growth conditions to the V2–V3 stage. Small pieces (2–3 mm) of maize leaf were harvested from approximately the midblade area, placed into fixative solution (4% formaldehyde in 10 mM phosphate-buffered saline [PBS] with 1:10,000 Silwet L-77 [Lehle Seeds, Round Rock, Texas, USA]), and vacuumed several times until tissues sank, and then fixed overnight at 4°C. Fixed leaf tissue was then embedded in paraffin using a microwave-assisted (PELCO BioWave Pro, Ted Pella Inc., Redding, California, USA) infiltration technique to generate formalin-fixed paraffin-embedded (FFPE) plant tissue specimens (Schichnes et al., 2005 ; see Appendix 1).
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5

Microwave-Assisted Tissue Fixation and Embedding

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Tissue samples from mouse brain and skin were fixed in 2% PFA, 2.5% glutaraldehyde in 0.15 M Cacodylate buffer pH 7.4 with 2 mM CaCl2. Samples of Arabidopsis leaves were fixed in 0.5% PFA, 2.5% Glutaraldehyde in 0.1 M phosphate buffer pH 6.8. After several washes in buffer samples were processed in a Pelco Biowave Pro, (Ted Pella, Inc., www.tedpella.com) with use of microwave energy and vacuum. Briefly, samples were fixed in 1% reduced Osmium in cacodylate buffer with CaCl2 7× 2 min with alternating microwave power of 100 W/0 W. This step was repeated once. After two washes in UPW with power of 250 W, samples were stained in 1% Uranyl acetate 7× 1 min with alternating microwave power of 150 W/0 W. After two washes in UPW, samples were dehydrated in series of EtOH, each step 40 s at 250 W without vacuum. In the next steps samples were infiltrated in series of different dilutions of Epon resin: EtOH 7× 3 min each at 250 W with vacuum. Finally, samples were embedded in Epon resin 30 min at 200 W, 2× 45 min at 375 W with no vacuum.
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6

Ultrastructural Sample Preparation for TEM

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To prepare samples, cells were washed in PBS and then fixed in 2.5% glutaraldehyde (GA) in 200 mM HEPES pH 7.4 for 30 min at room temperature then overnight at 4°C. After several washes in 200 mM HEPES buffer, samples were processed in a Pelco Biowave Pro (Ted Pella, USA) with use of microwave energy and vacuum. Briefly, samples were fixed and stained using a reduced osmium, thiocarbohydrazine, osmium (ROTO)/en bloc lead aspartate protocol (Lerner et al., 2017 (link)). Samples destined for stereological analysis were dehydrated using an ethanol series of 50, 75, 90 and 100% then lifted from the tissue culture plastic with propylene oxide, washed four times in dry acetone and transferred to 1.5 ml microcentrifuge tubes. Samples were infiltrated with a dilution series of 50, 75 or 100% (v/v) of Ultra Bed Low Viscosity Epoxy (EMS) resin to acetone mix and centrifuged at 600 g between changes. Finally, samples were cured for a minimum of 48 h at 60°C before trimming and sectioning.
For sectioning and imaging, ultrathin sections (∼50 nm) were cut with an EM UC7 Ultramicrotome (Leica Microsystems) using an oscillating ultrasonic 35° diamond Knife (DiaTOME) at a cutting speed of 0.6 mm/sec, a frequency set by automatic mode and, a voltage of 6.0 volts. Images were acquired using a 120 kV Tecnai G2 Spirit BioTwin (FEI company) with an Orius CCD camera (Gatan Inc.)
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7

Ultrastructural Analysis of Mouse Brain and Fibroblasts

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Mice were transcardially perfused and fixed with 2.5% glutaraldehyde plus 4% PFA in PBS buffer, pH 7.4. Brains were removed and left to post-fix overnight in the same fixative at 4°C. Next, brains were cut coronally at 100 microns on a Leica Vibratome and rinsed in 0.1M sodium cacodylate buffer. For fibroblasts, the cells were fixed with 2.5% glutaraldehyde, made in 0.1M sodium cacodylate buffer. Cells were then rinsed in 0.1M sodium cacodylate buffer.
The following processing steps were carried out using the variable wattage Pelco BioWave Pro microwave oven (Ted Pella, Inc., Redding, CA): Mouse brains were post-fixed in 1% osmium tetroxide made in 0.1M sodium cacodylate buffer, rinsed in double distilled water (DDW), treated with 2% (aq.) uranyl acetate, DDW rinse, ethanol dehydration series up to 100% ethanol and propylene oxide, followed by a Embed-812 resin (Electron Microscopy Sciences, Hatfield, PA.) infiltration series up to 100% resin. The epoxy resin was polymerized for 20 hours in an oven set at 60° C. Ultra-thin sections were cut on a Leica EM-UC7 Ultramicrotome (90nm). Thin sections were picked up and placed on 200 mesh cooper grids and post-stained with uranyl acetate and lead citrate. Imaging was accomplished using a JEOL-1400 Transmission Electron Microscope operating at 80kV and an AMT BioSprint-29 camera.
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8

Scaffold Imaging and Preparation Protocol

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CPC and CPC+PCL scaffolds before and after cell seeding and incubation for up to 14 days were imaged via a scanning electron microscope JEOL 7001F (Jeol Ltd., Akishima, Japan) operated at a voltage of 5 kV in a working distance of 8–12 mm, provided by the Science and Engineering Faculty, QUT. For sample preparation, scaffold samples were fixed with 4% formaldehyde (CAS 50-00-0) and glutaraldehyde (CAS 111-30-8) and dehydrated in a PELCO BioWave® Pro+ (Ted Pella Inc., Redding, CA, USA) using a PELCO Microwave Microcentrifuge Tubes PTFE Holder. In brief, samples were vacuum dried in a series of increasing ethanol concentrations (30–100%; CAS 64-17-5), with additional dimethyl sulfoxide (DMSO; CAS 67-68-5) treatment. Samples were coated with a gold layer using a sputter coater EM SCD005 (Leica Microsystems GmbH, Wetzlar, Germany) at 30 mA for 90 s.
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9

Transmission Electron Microscopy of Bee Tissues

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Five honey bees were collected from each of the three colonies maintained in an incubator at 96 h after IAPV infection. The midgut and trachea were dissected and removed as mentioned above, and were prepared for transmission electron microscopy (TEM) as published previously by Pilgrim et al. [32 (link)]. In brief, tissues were dissected into 2% (wt/vol) paraformaldehyde containing 2.5% (wt/vol) glutaraldehyde in 0.1 M phosphate buffer (pH 7.4), which was as fixative. Then, heavy metal staining consisting of ddH2O was performed using 2% (wt/vol) OsO4, followed by 1% (wt/vol) tannic acid and then 1% (wt/vol) aqueous uranyl acetate. To prevent precipitation, washing the tissue with ddH2O between each staining step was carried out. A Pelco BiowavePro (Ted Pella Inc., Redding, CA, USA) was used to perform fixation and staining steps at 100 W 20 Hg, for 3 min and 1 min, respectively. Dehydration was in a graded ethanol series before filtration and embedding in medium premix resin (TAAB, Reading, UK). For TEM, the tissues were cut into 70 to 74 nm serial sections and collected on Formvar-coated (0.25% (wt/vol) in chloroform; TAAB, Reading, UK) Gilder 200 mesh copper grids (GG017/C, TAAB, Reading, UK) using a UC6 ultra microtome (Leica Microsystems, Wetzlar, Germany). Images were acquired on a 120 kV HT7700 (HITACHI, Tokyo, Japan).
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10

Saliva Specimen Preparation for Electron Microscopy

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Saliva samples were fixed with glutaraldehyde (2.5%) in a 0.1 M sodium cacodylate buffer for 12 h at 4°C. Saliva samples were deposited in Greiner Bio‐One 96‐well single‐break strip microplates (Greiner Bio‐One) coated with poly‐L lysine to retain the material. Resin embedding of the microplates was then performed as previously described [14 (link)]. Resin embedding was microwave‐assisted with PELCO BiowavePro+ (Ted Pella). Samples were washed with a mixture of 0.2 M saccharose/0.1 M sodium cacodylate and post‐fixed with 1% OsO4 diluted in 0.2 M potassium hexa‐cyanoferrate (III)/0.1 251 M sodium cacodylate buffer. After being washed with distilled water, samples were gradually dehydrated by successive baths containing 30% to 100% ethanol. Substitution with Epon resin was achieved by incubations with 25%–100% Epon resin, and samples were placed in a polymerization chamber. Resin microwave‐curing was performed for a total of 2 h. After curing, the resin blocks were manually trimmed with a razor blade and the bases of the dishes were detached by cold shock via immersion in liquid nitrogen for 20 s. Resin blocks were placed in a UC7 ultramicrotome (Leica), trimmed to pyramids, and ultrathin 100 nm sections were cut and placed on HR25 300 Mesh Copper/Rhodium grids (TAAB).
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