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14 protocols using dmso d6

1

Synthesis of (R)-6-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide

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Example 16

This example is directed to a synthesis of (R)-6-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide.

[Figure (not displayed)]

To a solution of 6-methylimidazo[1,2-a]pyridine-2-carboxylic acid (100 mg, 0.57 mmol) in DMF (6.0 mL) were added HATU (324 mg, 0.851 mmol) and DIPEA (297 μL, 1.70 mmol). The reaction mixture was stirred at room temperature for 1 hours. After addition of (R)-1-(4-morpholinophenyl)ethanamine hydrochloride (intermediate 4, 207 mg, 0.851 mmol), the reaction mixture was stirred at room temperature for 18 hours. The reaction mixture was partitioned between water and EtOAc and the separated aqueous layer was extracted with EtOAc. The combined organic layers were washed with water and brine, dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by column chromatography on NH—SiO2 (Hexane:EtOAc=1:1 to 1:3) to afford the (R)-6-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide (105 mg, 51%) as a white solid. 1H-NMR (DMSO-d6, Varian, 400 MHz): δ 1.47 (3H, d, J=7.2 Hz), 2.77 (3H, s), 3.05 (4H, t, J=4.6 Hz), 3.72 (4H, t, J=4.6 Hz), 5.06-5.10 (1H, m), 6.89 (2H, d, J=8.8 Hz), 7.20 (1H, d, J=8.8 Hz), 7.28 (2H, d, J=8.8 Hz), 7.50 (1H, d, J=8.8 Hz), 8.24 (1H, s), 8.37-8.40 (2H, m). MS: 365.3 [MH+].

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2

Synthesis of (R)-N-(1-(4-morpholinophenyl)ethyl)pyrazolo[1,5-a]pyridine-2-carboxamide

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Example 28

This example is directed to a synthesis of (R)—N-(1-(4-morpholinophenyl)ethyl) pyrazolo[1,5-a]pyridine-2-carboxamide.

[Figure (not displayed)]

To a solution of pyrazolo[1,5-a]pyridine-2-carboxylic acid (100 mg, 0.617 mmol) in DMF (6.0 mL) were added HATU (305 mg, 0.80 mmol) and DIPEA (323 μL, 1.85 mmol). The reaction mixture was stirred at room temperature for 1 hour. After addition of (R)-1-(4-morpholinophenyl)ethanamine hydrochloride (intermediate 4, 165 mg, 0.80 mmol), the reaction mixture was stirred at room temperature for 18 hours. The reaction mixture was partitioned between water and EtOAc and the aqueous layer was extracted with EtOAc. The combined organic layers were washed with water and brine, dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by column chromatography on NH—SiO2 (Hexane:EtOAc=3:1 to 1:1) to afford the (R)—N-(1-(4-morpholinophenyl)ethyl)pyrazolo[1,5-a]pyridine-2-carboxamide (129 mg, 60%) as a white solid. 1H-NMR (DMSO-d6, Varian, 400 MHz): δ 1.47 (3H, d, J=7.2 Hz), 3.06 (4H, t, J=4.6 Hz), 3.72 (4H, t, J=4.4 Hz), 5.07-5.14 (1H, m), 6.89 (2H, d, J=8.8 Hz), 6.97 (1H, s), 7.02 (1H, t, J=6.8 Hz), 7.26-7.30 (3H, m), 7.76 (1H, d, J=8.8 Hz), 8.60 (1H, d, J=8.0 Hz), 8.68 (1H, d, J=7.2 Hz).

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3

Extraction and Characterization of EGCG from Oolong Tea

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Dried Oolong tea leaves (26 g, Jin Xuang No. 12, Boonrod Farm, Chiang Mai, Thailand) were stirred with methanol (300 mL) at 55 °C for 3 h, then the mixture was cooled, and solid residues were filtered out. The liquid extract was evaporated under the reduced pressure at 50 °C to obtain the crude extract. The crude extract was partitioned with 40 mL of dichloromethane : methanol : water (3 : 1 : 0.2 v/v) mixture. The methanol/water layer was collected and evaporated under low pressure at 55 °C to obtain the extracted EGCG (5.04 g). The obtained EGCG was subjected to 1H NMR (DMSO-D6, 400 MHz Varian Mercury+ NMR spectrometer) and reverse phase HPLC analyses.
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4

Spectroscopic Analysis of Organic Compounds

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The mass spectra were recorded on GCMS-Q1000-EX Shimadzu and GCMS 5988-A HP spectrometers, and the ionizing voltage was 70 eV (Tokyo, Japan). The IR spectra were recorded in potassium bromide discs on Shimadzu FT IR 8101 PC infrared spectrophotometer (Shimadzu, Tokyo, Japan). The 1H- and 13C-NMR spectra were recorded on Varian Mercury VXR-300 spectrometer (300 MHz for 1H-NMR and 75 MHz for 13C-NMR), and the chemical shifts were related to those of the solvent DMSO-d6 (Varian, Inc., Karlsruhe, Germany). All reactions were followed by thin-layer chromatography (TLC) (silica gel, Aluminum Sheets 60 F254, Merck, Cairo, Egypt). Elemental analyses were carried out at the Microanalytical Centre of Cairo University, Giza, Egypt. Sonication was performed in Shanghai Branson-CQX ultrasonic cleaner at a frequency of 40 kHz, and ultrasonic power was kept at 250 W.
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5

NMR Spectroscopy for Structural Elucidation

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Structure elucidation of purified fractions was performed through nuclear magnetic resonance (NMR) spectroscopy. All NMR spectra were recorded using a Varian Inova NMR spectrometers (1H, 500 MHz or 400 MHz; 13C, 125 MHz or 100 MHz) where δ-values were referenced to respective solvent signals [CD3OD, δH 3.31 ppm, δC 49.15 ppm; DMSO-d6, δH 2.50 ppm, δC 39.51 ppm] (Palo Alto, CA).
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6

General Synthetic Procedure for Reagent Preparation

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Example 1

General Synthetic Procedure: All commercial reagents were purchased and used as received without further purification. Pd(OAc)2 was purchased from Pressure Chemical Co. n-Bu4NBr, CuI, 2-(tributylstannyl)pyridine and 2-picolinic acid were purchased from Sigma Aldrich. Silica gel (40-60 μm) was purchased from Agela Technologies and BDH. DMSO, toluene (low water), and acetic acid were purchased from Alfa Aesar, J. T. Baker, Fluke and BDH respectively.

All reactions were carried out under an inert N2 atmosphere in oven-dried glassware. External bath temperatures were used to record all reaction temperatures. Flash column chromatography was carried out with silica gel. Proton and carbon NMR spectra (1H NMR and 13C NMR) were recorded in dimethyl sulfoxide-d6 (DMSO-d6) on a Varian 400 MHz NMR spectrometer. The solvent residual peak (DMSO-d6) was calibrated to 2.50 ppm for 1H NMR and 39.52 ppm for 13C NMR. Multiplicities are abbreviated as follows: s=singlet, d=doublet, dd=doublet of doublets, t=triplet, br=broad, m=multiplet.

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7

Synthesis and Characterization of Deacetylcolchicine-PEG Conjugate

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Example 5

[Figure (not displayed)]

Deacetylcolchicine.TFA (3, 0.18 gm, 0.39 mmol, 1.0 eq.) and N3—PEG4-Phe-Lys(Trt)-PAB-NPC (0.50 gm, 0.46 mmol, 1.2 eq.) were dissolved in anhydrous DMF (5 mL). TEA (162 μL, 1.16 mmol, 3.0 eq.) and DIPEA (202 μL, 1.16 mmol, 3.0 eq.) were added to the reaction mixture. The yellowish-colored solution was allowed to stir overnight at room temperature under argon atmosphere. The reaction mixture was evaporated to dryness under vacuum at 37° C. The crude product was dissolved in ethyl acetate, purified by a silica gel column on Biotage using ethyl acetate as mobile phase A and methanol as mobile phase B. Elution was monitored at 317 nm. The product-containing fraction was evaporated to near dryness by rotary evaporation, and further dried in vacuum overnight, to give 0.47 gm of yellow colored solid (5, Yield: 79%). Purity 98% (HPLC). NMR of compound 5 (Varian, 10 mg/mL DMSO-d6, δ): 9.992 ppm, s, 1H; 8.112 ppm, m, 2H; 8.020 ppm, d, 1H; 7.566 ppm, d, 2H; 7.381 ppm, d, 6H; 7.226-7.271 ppm, m, 14H; 7.105-7.209 ppm, m, 4H; 7.039 ppm, d, 1H; 6.766 ppm, s, 1H; 4.891 ppm, dd, 2H; 4.557 ppm, t, 1H, ill resolved; 4.080 ppm, m, 1H; 3.870 ppm, s, 3H; 3.828 ppm, s, 3H; 3.784 ppm, s, 3H; 3.527 ppm, m, —CH2CH2O—; 3.519 ppm, s, 3H; 2.996 ppm, dd, 1H; 2.742 ppm, 7, 1H; 2.575 ppm, m, 1H; 1.2-2.3 ppm, multiple peaks.

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8

Palladium-Catalyzed Heterocycle Synthesis

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All commercial reagents were purchased and used as received without further purification. Pd(OAc)2 was purchased from Pressure Chemical Co. n-Bu4NBr, CuI, 2-(tributylstannyl)pyridine and 2-picolinic acid were purchased from Sigma Aldrich. Silica gel (40–60 μm) was purchased from Agela Technologies and BDH. Solvents DMSO, toluene (low water), acetate acid were purchased from Alfa Aesar, J. T. Baker, Fluke and BDH respectively. All reactions were carried out under an inert N2 atmosphere in oven-dried glassware. External bath temperatures were used to record all reaction temperatures. Flash column chromatography was carried out with silica gel. Proton and carbon NMR spectra (1H NMR and 13C NMR) were recorded in dimethyl sulfoxide-d6 (DMSO-d6) on a Varian 400 MHz NMR spectrometer. The solvent residual peak (DMSO-d6) was calibrated to 2.50 ppm for 1H NMR and 39.52 ppm for 13C NMR. Multiplicities are abbreviated as follows: s = singlet, d = doublet, t = triplet, br = broad, m = multiplet.
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9

Synthesis of (R)-5-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide

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Example 15

This example is directed to a synthesis of (R)-5-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide.

[Figure (not displayed)]

To a solution of 5-methylimidazo[1,2-a]pyridine-2-carboxylic acid (100 mg, 0.57 mmol) in DMF (6.0 mL) were added HATU (324 mg, 0.851 mmol) and DIPEA (297 μL, 1.70 mmol). The reaction mixture was stirred at room temperature for 1 hour. After addition of (R)-1-(4-morpholinophenyl)ethanamine hydrochloride (intermediate 4, 207 mg, 0.851 mmol), the reaction mixture was stirred at room temperature for 18 hours. The reaction mixture was partitioned between water and EtOAc and the separated aqueous layer was extracted with EtOAc. The combined organic layers were washed with water and brine, dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by column chromatography on NH—SiO2 (Hexane:EtOAc=1:1 to 1:3) to afford the (R)-5-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide (90.0 mg, 44%) as a white solid. 1H-NMR (DMSO-d6, Varian, 400 MHz): δ 1.49 (3H, d, J=7.2 Hz), 2.63 (3H, s), 3.05 (4H, t, J=5.0 Hz), 3.72 (4H, t, J=4.6 Hz), 5.08-5.16 (1H, m), 6.85 (1H, d, J=6.8 Hz), 6.89 (2H, d, J=8.8 Hz), 7.28-7.34 (3H, m), 7.50 (1H, d, J=9.2 Hz), 8.22 (1H, s), 8.46 (1H, d, J=8.8 Hz). MS: 365.3 [MH+].

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10

Synthesis of (R)-7-Methyl-N-(1-(4-Morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-Carboxamide

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Example 17

This example is directed to a synthesis of (R)-7-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide.

[Figure (not displayed)]

To a solution of 7-methylimidazo[1,2-a]pyridine-2-carboxylic acid (100 mg, 0.57 mmol) in DMF (6.0 mL) were added HATU (324 mg, 0.851 mmol) and DIPEA (297 μL, 1.70 mmol). The reaction mixture was stirred at room temperature for 1 hours. After addition of (R)-1-(4-morpholinophenyl)ethanamine hydrochloride (intermediate 4, 207 mg, 0.851 mmol), the reaction mixture was stirred at room temperature for 18 hours. The reaction mixture was partitioned between water and EtOAc and the separated aqueous layer was extracted with EtOAc. The combined organic layers were washed with water and brine, dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by column chromatography on NH—SiO2 (Hexane:EtOAc=1:1 to 1:3) to afford the (R)-7-methyl-N-(1-(4-morpholinophenyl)ethyl)imidazo[1,2-a]pyridine-2-carboxamide (130 mg, 63%) as a white solid. 1H-NMR (DMSO-d6, Varian, 400 MHz): δ 1.47 (3H, d, J=7.2 Hz), 2.36 (3H, s), 3.05 (4H, t, J=4.8 Hz), 3.72 (4H, t, J=4.6 Hz), 5.06-5.10 (1H, m), 6.82 (1H, d, J=6.4 Hz), 6.89 (2H, d, J=8.8 Hz), 7.28 (2H, d, J=8.8 Hz), 7.34 (1H, s), 8.24 (1H, s), 8.38 (1H, d, J=8.4 Hz), 8.45 (1H, d, J=7.2 Hz). MS: 365.3 [MH+].

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