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7 protocols using qbsf 60 medium

1

PDX Cytotoxicity Screening Protocol

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PDXs were cultured in QBSF 60 medium (Quality Biological, USA) supplemented with Flt-3 ligand (20 ng/mL, ProSpec, USA), penicillin (100 U/mL), streptomycin (100 μg/mL) and L-glutamine (2 mM) (QBSF 60/F). Cisplatin and dexamethasone sensitivities were assessed by measuring mitochondrial activity via the Alamar Blue assay or cell viability by 7-AAD exclusion using flow cytometry as previously described [10 (link), 12 (link), 40 (link), 41 (link)]. Cell viability was expressed as a percentage of vehicle treated controls.
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2

Apoptosis assay in leukemia cell lines

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PDX cells were resuspended in QBSF-60 medium (Quality Biological, Gaithersburg, MD) with 20 ng/ml Flt-3 ligand, 100 U/ml penicillin, 100 μg/ml streptomycin, 2 mM L-glutamine. Patient samples were cultured in StemSpan media (Stem Cell Technologies, Vancouver, Canada) with 20 ng/ml IL-3, 20 ng/ml IL-6, 100 ng/ml FLT-3L, 100 ng/ml SCF. The NALM6 cell line (RIKEN BioResource Center, Ibaraki, Japan) was used within 3 months of culture following validation by short tandem repeat analysis, and maintained in RPMI with 10% heat inactivated fetal calf serum, 100 U/ml penicillin, 100 μg/ml streptomycin, 2 mM L-glutamine. For some experiments cells were pre-treated with 10 ng/ml TNFα (Lonza Australia, Gordon, NSW), 10 μg/ml Enbrel (etanercept, soluble TNFR2 fused to Fc; Clifford Hallam Healthcare, VIC, Australia), 10 μM Q-VD-Oph (QVD; Sigma-Aldrich, St Louis, MO) or 10 μM Necrostatin-1 (Nec-1; Selleck Chemicals, Houston, TX) for 2 h before the addition of birinapant (TetraLogic Pharmaceuticals, Malvern, PA). Apoptosis was determined using Annexin V/7-AAD staining 24 h later.
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Xenograft Drug Sensitivity Assay

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Xenograft cells were assessed for single agent ex vivo drug sensitivity by Alamar blue assay; cells were retrieved from cryostorage and resuspended in QBSF-60 medium (Quality Biological, Gaithesburg, MD, USA) supplemented with 20 ng/mL Flt-3 ligand, 100 U/mL penicillin, 100 μg/mL streptomycin, and 2 mmol/L L-glutamine. Before treatment, cells were plated in 96-well plates (100 μL/well) at a density previously optimized and were equilibrated overnight at 37°C with 5% CO2. Cells were then treated with 10-fold serial dilutions of each drug (DEX, VCR, ASP or DNR: 100 μM- 1nM) for 48 hours, at which point Alamar blue reagent was added (0.6 mmol/L Resazurin, 0.07 mmol/L Methylene Blue, 1 mmol/L potassium hexacyanoferrate (III), 1 mmol/L potassium hexacyanoferrate (II) trihydrate). Fluorescence was measured at 0 and 6 hours using a fluorescent plate reader (VICTOR, PerkinElmer, Glen Waverley, VIC, Australia) with excitation at 560 nm and emission at 590 nm and data are expressed as a percentage of untreated controls.
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4

Lentiviral Transduction of MSCs with HLA-G1

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MSC cultures at 60% confluence were incubated overnight with supernatants containing lentiviral particles encoding HLA-G1 diluted in serum-free QBSF-60 medium (Quality Biological, Gaithersburg, MD) and 8 μg/ml protamine sulfate (Calbiochem, San Diego, CA). Transduction was performed at an MOI that yielded similar levels of HLA-G1-expressing MSC for all gene delivery systems. After transduction, cells were washed, and media was changed to MSCGM (Lonza). Stably transduced MSC with HLA-G1 (LvMSC-HLA-G1) were analyzed for transgene expression using flow cytometry.
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5

Lentiviral Transduction of MSCs with HLA-G1

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MSC cultures at 60% confluence were incubated overnight with supernatants containing lentiviral particles encoding HLA-G1 diluted in serum-free QBSF-60 medium (Quality Biological, Gaithersburg, MD) and 8 μg/ml protamine sulfate (Calbiochem, San Diego, CA). Transduction was performed at an MOI that yielded similar levels of HLA-G1-expressing MSC for all gene delivery systems. After transduction, cells were washed, and media was changed to MSCGM (Lonza). Stably transduced MSC with HLA-G1 (LvMSC-HLA-G1) were analyzed for transgene expression using flow cytometry.
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6

Cell Viability Assay for RG7112 Treatment

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RS4;11, Jurkat, CEM, NALM6 cell lines were all obtained from commercial suppliers and used within 3 months of culture following validation by short tandem repeat analysis. Cell lines were maintained in RPMI supplemented with 10% heat inactivated fetal calf serum, 100 U/ml penicillin, 100 μg/ml streptomycin and 2 mM L-glutamine (Life Technologies, Carlsbad, CA). ALL cell lines were validated by Short Tandem Repeat analysis, verified mycoplasma-free and cultured for <3 months. Xenograft cells were retrieved from cryostorage and resuspended in QBSF-60 medium (Quality Biological, Gaithersburg, MD) supplemented with 20 ng/ml Flt-3 ligand, 100 U/ml penicillin, 100 μg/ml streptomycin and 2 mM L-glutamine. Prior to treatment, cells were plated in 96-well plates (100 μl/well) at a density previously optimized and were equilibrated overnight at 37°C with 5% CO2. Cells were then treated with 10-fold serial dilutions of RG7112 (10 μM – 1 pM) for 48 h, at which point AlamarBlue reagent [0.6 mM Resazurin, 0.07 mM Methylene Blue, 1 mM potassium hexacyanoferrate (III), 1 mM potassium hexacyanoferrate (II) trihydrate] was added. Fluorescence was measured at 0 and 6 h following addition of AlamarBlue using a fluorescent plate reader (VICTOR3™, PerkinElmer, MA) with excitation at 560 nm and emission at 590 nm. Data are expressed as a percentage of untreated controls.
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7

Viability Assay of Xenograft Cells

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Xenograft cells were retrieved from cryostorage and resuspended in QBSF-60 medium (Quality Biological, Gaithersburg, MD) supplemented with Flt-3 ligand (20 ng/mL), penicillin (100 U/mL), streptomycin (100 μg/mL) and L-glutamine (2 mM). Viability was determined by trypan blue exclusion. Prior to treatment, cells were plated in 96-well plates (100 μL/well) at a density previously optimized (3–6 × 106/mL) and equilibrated overnight at 37°C in 5% CO2. Cells were exposed to 10-fold serial dilutions of AZD1480 or selumetinib (AstraZeneca, North Ryde, NSW) (10−6 to 10−12 M) for 72 h, following which AlamarBlue reagent (Life Technologies, Carlsbad, CA) was added and fluorescence was measured at 0, 6 and 24 h using a fluorescent plate reader (VICTOR3™, PerkinElmer, Waltham, MA) (excitation 560 nm, emission 590 nm). For fixed ratio combination assays, cells were treated with AZD1480 and selumetinib, alone or in combination, at 4, 2, 1, 0.5, 0.25 and 0.1 μM. The combination drug effect was assessed using Calcusyn software (Version 2.0, Biosoft, Cambridge, UK) to calculate Combination Indices (CIs) indicative of synergy (CI<1), additivity (CI=1) or antagonism (CI>1).
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