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31 protocols using bay11 7082

1

Oxidative Burst Modulation in PMNs

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Freshly isolated human PMNs (2 × 106 cells/ml) were resuspended in PBS, supplemented with 0.2% BSA and 5 mM glucose, and incubated with dihydrorhodamine-123 (2 μM; Invitrogen) for 30 min at RT. Cells were then incubated with control IgG1 or with soluble or immobilized G97-A mAb (1, 2, 5, 10, and 20 μg/ml) for 30 min at 37°C in the absence or presence of N-formyl–Met–Leu–Phe (fMLF, 1 μM; Sigma-Aldrich), before being placed on ice to stop the reaction. The accumulation of H2O2 was measured immediately by flow cytometry on a FACSCalibur machine (BD Biosciences, San Diego, CA, USA), and data were analyzed with FlowJo software version 7.6.1 (Tree Star, Ashland, OR, USA). To measure myeloperoxidase (MPO) activity, cell lysate was collected and analyzed using the Myeloperoxidase Activity Colorimetric Assay Kit (BioVision, Milpitas, CA, USA) according to the manufacturer's recommendations.
For signaling inhibitor treatment, PMNs were pre-incubated with the indicated reagents at 37°C for 30 min: PD98059 (20 μM; Cayman Chemical, Ann Arbor, MI, USA), U0126 (10 μM; Promega, Madison, WI, USA), Bay 11–7082 (5 μM; InvivoGen, San Diego, CA, USA), SP600125 (20 μM; Sigma-Aldrich), SB203580 (20 μM; Cayman Chemical) or N-acetylcysteine (NAC, 10 mM; Sigma-Aldrich) before proceeding with the functional assay.
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2

NF-κB Signaling Pathway Regulation

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Cells were co-transfected with pLuc or pNF-κB-Luc (500 ng/mL) and pHMCMV-RLuc (160 ng/mL) using Lipofectamine 2000 (Life Technologies). Following 6-hr incubation, the cells were infected with TRADs. After a total 48-hr incubation, luciferase activities in the cells were determined using the Dual Luciferase Reporter Assay System (Promega, Madison, WI, USA).
For the evaluation of the effects of NF-κB inhibitors on the NF-κB signaling, cells were treated with BAY11-7082 and MG-132 (Invivogen) 24 hr after transfection with plasmids as described above. A luciferase assay was performed 24 hr after the NF-κB inhibitor treatment.
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3

Immune Modulation by Nucleic Acids

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It is well known that poly(I:C) stimulates innate immunity such as TLR3.33 Thus, it was used for surrogate viral RNA such as rhinovirus.13 We also used CpG oligonucleotides (CpG–ODN), TLR9 ligand replacement of viral DNA. Both nucleic acid compounds were purchased from Novus Biologicals. IL‐13 and IL‐4 were purchased from PeproTech. IL‐33 was purchased from Wako Pure Chemical. IL‐37 and CC16 (Clara cell secretory protein; a marker of bronchial lung epithelial cells) were purchased from ProSpec and R&D Systems, respectively. BAY 11‐7082 (an inhibitor of nuclear factor kappa light chain (NF‐κB) enhancer of activated B cells was purchased from InvivoGen. Ruxolitinib, stattic (an inhibitor of signal transducer and activator of transcription 334), and LY294002 (a phosphatidylinositol kinase‐3 inhibitor) were purchased from Cayman Chemical. The chemotherapy agent, fludarabine, was purchased from Wako Pure Chemical. The corticosteroid, FP, was purchased from Sigma. A type I interferon (IFNs) neutralizing antibody mixture was purchased from PBL Assay Science. Small interfering RNAs (siRNAs) for TLR3, interferon regulatory factor (IRF) 3, RelA (a NF‐κB subunit), JAK1, STAT6, extracellular signal‐regulated kinase (ERK) 1, ERK2, Stealth RNAi siRNA Negative Control Med GC Duplex #2, and Lipofectamine RNA iMAX Reagent were purchased from Invitrogen.
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4

Inflammasome Activation in Macrophages

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BOT-4-one was provided by Sang-Kyu Ye and Byung-Hak Kim (Seoul National University of College of Medicine, South Korea)17 (link). Penicillin-streptomycin, fetal bovine serum (FBS), opti-MEM, and RPMI 1640 were purchased from Gibco (Grand Island, NY, USA). IL-1β antibody (AF401)8 and IL-1β enzyme-linked immunosorbent assay (ELISA) kit were purchased from R&D Systems (Minneapolis, MN, USA). Antibodies against ASC (AL177)8 , NLRP3 (Cryo-2)8 , and caspase-1 (clone Casper-1)8 were purchased from Adipogen (San Diego, CA, USA). β-actin (sc-1616)43 (link) and ubiquitin (sc-8017)37 (link) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Monosodium urate (MSU) crystal, Bay11-7082, silica crystal, nigericin, flagellin from S. typhimurium, poly(dAdT), Pam3CSK4, and zVAD-FMK were purchased from InvivoGen (San Diego, CA, USA). Mouse TNF-α ELISA Ready-SET-Go was purchased from eBioscience (San Diego, CA, USA). A western blot chemiluminescence reagent kit was purchased from Pierce Chemical (Rockford, IL, USA). Polyvinylidene fluoride (PVDF) and nitrocellulose membrane were purchased from Millipore Corporation (Bedford, MA, USA). LPS (Escherichia. coli 026:B6 and 011:B4), 3,4-methylenedioxy-β-nitrostyrene, and ATP were purchased from Sigma-Aldrich (St.Louis, MO, USA). All other chemicals used were of the highest quality among those that are commercially available.
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5

Signaling Inhibitors in HSV-2 Infection

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Vero cell line and human cervical epithelial cell lines ME-180 and HeLa were purchased from American Type Culture Collection (ATCC) and cultured in DMEM supplemented with 10% FBS and antibiotics. HSV-2 (G strain) was obtained from LGC standards, propagated in ME-180, and titrated in Vero cells. Titrated virus stocks were aliquoted and stored at −80°C until use. Signaling inhibitors specifically targeting TBK1/IKKε (BX795), IκB-α (BAY11-7082), JNK (SP600125), and p38 (SB203580) were purchased from InvivoGen and used according to the manufacturer's instructions.
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6

Phagocytic Activity of NR8383 Cells

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NR8383 cells were first treated with one of the following: CX3CL1 protein (R&D Systems, Minneapolis, MN, USA), anti-CX3CR1 antibody (R&D Systems, Minneapolis, MN, USA), MFG-E8 protein (R&D Systems, Minneapolis, MN, USA), Bay11–7082 (InvivoGen, San Diego, CA, USA) or UO126 (Tocris Bioscience, Bristol, UK). Thereafter, NR8383 cells were washed with 5% PBS solution twice. Subsequently, the NR8383 cells were incubated with PKH−26 (Sigma-Aldrich, St. Louis, MO, USA) labeled Ida-ATRA-NB4 cells (2 × 106) for 30 min before determining the amount of phagocytosis using a BD FACScan [24 (link)]. A subset of the Ida-ATRA-NB4 cells was treated with anti-CX3CL1 (R&D Systems, Minneapolis, MN, USA) before labeling with PKH−26. The results were expressed either as the percentage (%) of NR8383 cells with phagocytic activity in engulfing apoptotic cells or as a phagocytosis index that indicates a fold increase relative to the phagocytic activity of untreated NR8383 cells.
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7

Signaling Pathway Inhibitors in Neutrophils

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To study the underlying signalling NET pathway, several chemical inhibitors were used. Before stimulation, neutrophils were pre-treated for 30 min at 37 °C in RPMI 10% with DMSO (vehicle control), 1 µM Wortmannin (PI3K inhibitor; Sigma-Aldrich), 1 µM R406 (SYK inhibitor; Selleckchem), 10 µM SB203580 (p38 MAPK inhibitor; Selleckchem), 10 µM SB202190 (p38 MAPK inhibitor; Santa Cruz Biotechnology) 10 µM MLN0128 (pan-mTORC inhibitor; Selleckchem), 10 µM BAPTA-AM (chelator of Ca2+;Focus Biomolecules), 1 µM DPI (NADPH oxidase inhibitor; Sigma-Aldrich), 1 µM Rapamycin (mTORC1 inhibitor; Selleckchem), 1 µM Celastrol (NF-κB inhibitor; InvivoGen), 0.1 µM Bay-11-7082 (IκB phosphorylation inhibitor; InvivoGen), 0.1 µM GW5074 (cRaf1 kinase inhibitor; Santa Cruz Biotechnology), 0.1 µM U-73122 hydrate (PLC inhibitor; Sigma-Aldrich), 1 nM Bafilomycin A (vacuolar-type H+ -ATPase inhibitor; Sigma-Aldrich), 0.1 µM JNKi II 420128 (JNK inhibitor; Merck Millipore) or 0.1 µM Mytoquinone (mitochondrial ROS inhibitor; BIOTREND).
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8

Inflammatory Mediator Modulation Protocol

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ILG was purchased from AK Scientific Inc. (Union City, CA, USA) and Sigma-Aldrich (St. Louis, MO, USA). Pioglitazone was purchased from Funakoshi (Tokyo, Japan). ILG and pioglitazone were dissolved in dimethyl sulfoxide (DMSO). Recombinant mouse TNF-α, IL-4, and IFN-γ were purchased from R & D Systems (Minneapolis, MN, USA). Human insulin was purchased from Eli Lilly (Indianapolis, IN, USA). LPS from E. coli O55:B5, lipid A from Salmonella minnesota, palmitic acid, TDM, ATP, and thioglycolate were purchased from Sigma-Aldrich. palmitic acid was conjugated to bovine serum albumin (BSA, Sigma-Aldrich) to increase solubility. BAY11-7082 was purchased from InvivoGen (San Diego, CA, USA). PD98059 was purchased from Merck Millipore (Darmstadt, Germany).
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9

Recombinant Cytokine Optimization for NF-κB Inhibition

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Recombinant human and mouse tumor necrosis factor (TNF)-α were purchased from Invivogen (San Diego, CA) and Peprotech (Rocky Hill, NJ), respectively. NF-κB inhibitors, BAY11-7082 and MG-132, were purchased from Invivogen. Recombinant human interferon-α (IFN-α) was purchased from PBL interferon source (Piscataway, NJ).
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10

Monocyte Cytokine Response to Fungal Infection

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Human monocytes were positively selected by using CD14 microbeads coupled to a magnetic cell sorting system (Miltenyi Biotec). The isolated cells were incubated in a 24-well plate at 37 °C and 5% CO2, and stimulated for three hours with specific inhibitors reported in previous studies: 5 µM Interleukin-1 Receptor-Associated Kinase (IRAK) inhibitor (CAS 509093-47-4, Merck), 5 µM Spleen tyrosine kinase (Syk) inhibitor (ER 27319 maleate, R&D systems), 10 µM NF-KB inhibitor (Bay11-7082, In vivogen), 10 µg/mL human TLR2 Neutralizing antibody (Ab) (PAb-hTLR2, In vivogen), and 5 µM TLR4 inhibitor (CLI-095, In vivogen) (35 (link)–38 (link)). Inhibition of IRAK, Syk, and the nuclear factor kappa-light-chain-enhancer of activated B-cells (NF-κB) was performed at a density of 1x106 cells/well in 1 mL of RPMI medium supplemented with 10% v/v FBS, while TLRs at a density of 5x105 cells/well in 0,5 mL of total volume. Subsequently, the monocytes were infected with the mucoralean fungi at MOI 5 for sixteen hours. Then, the supernatants were collected and the secreted cytokines were determined by ELISA MAX™ Deluxe kit (Biolegend). PAM3CSKA (In vivoGen) and ultrapure Lipopolysaccharide (LPS) (In vivoGen) were used as agonists for TLR axis activation, while Mannan (Sigma Aldrich) was used for CTL activation.
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