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17 protocols using ciap2

1

Characterization of Murine Macrophage Polarization

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The general reagents were purchased from Sigma-Aldrich (UK), unless stated otherwise. RPMI 1640, lipopolysaccharide (LPS), Gentamicin, MTT and NaNO2, sodium nitroprusside (SNP), penicillin–streptomycin solution, and metformin were procured from Sigma-Aldrich. Recombinant mouse IFNγ cytokine is from eBiosciences (San Diego, CA, USA). CD11b+ human and Mouse MACS Microbeads and LC Columns are from Miltenyi Biotec. Primary antibodies including rabbit polyclonal NOS-2, rabbit polyclonal xIAP, cIAP-1, cIAP-2, LAMP-2, CD-206, rabbit polyclonal β-actin, and mouse monoclonal β-actin are from Santa Cruz biotechnology. Mouse monoclonal arginase-1 is from BD Biosciences. Rabbit monoclonal STAT1 and 3, pp38MAPK, and pNF-kB p65 are from Cell Signalling Technology. Ym-1 antibody was purchased from Stem cell technologies; Fizz-1 antibody was from Abcam. HRP-linked anti-mouse IgG and anti-rabbit IgG are from Cell Signalling Technology. TNFα and IL-10 ELISA kits were purchased from R&D system (Darmstadt, Germany).
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2

Targeting the HER3 signaling pathway

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The anti-HER3 antibody 9F7-F11 has been described elsewhere [2 (link), 32 (link), 33 (link), 36 (link)]. Rabbit monoclonal antibodies against HER3 and phosphorylated (p) HER3 (Tyr1289), PARP (clone 46D11), cleaved caspase-8 (Asp391; clone 18C8), caspase-9 and cleaved caspase-9, caspase-3 (clone 8G10) and cleaved caspase-3, XIAP, DR5 (clone D4E7), BIM, c-FLIP (clone D16A8), USP9X, β-actin and β-tubulin were from Cell Signaling Technology (Danvers, MA). The mouse monoclonal antibody against ITCH was from BD Biosciences (San José, CA; ref.611199). The rabbit polyclonal antibodies against HER3 (clone C17), USP8, USP9X, c-FLIPL/S (clone H-202), BAX, FAS, TRAIL, DcR2, cIAP2, and BID were from Santa Cruz Biotechnology (Santa Cruz, CA). For detection of activated ITCH, a rabbit anti-pITCH (Thr222) antibody from Millipore (Billerica, MA) was used. The human recombinant NRG1-β1 extracellular domain (ECD) was from RD Systems (Minneapolis, MN) and was used at 100 ng/ml. The proteasome inhibitor MG132 and chlorimipramine (CI) were from Sigma-Aldrich (St Louis, MO). The control IgG antibody used for co-immunoprecipitation experiments was from Santa Cruz Biotechnology.
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3

Investigating Apoptotic Pathways in Cancer

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ECA109 and TE-13 cell lines were from the Affiliated Cancer Hospital and the Institute of Guangzhou Medical University. The (20S) G-Rh2 (≥97%) was purchased from Sigma Aldrich and dissolved in 75% ethanol at a concentration of 7.5 mg/mL and stored at −80 °C. The Cisplantin (≥98%) was purchased from Sigma Aldrich and dissolved in a phosphate buffer saline (PBS) at a concentration of 10 mg/mL and stored at −80 °C. Caspase substrates, Ac-DEVD-AFC, Ac-IETD-AFC, and Ac-LEHD-AFC were purchased from Calbiochem (La Jolla, CA, USA). The Mitochondria Isolation Kit was purchased from Pierce (Rockford, IL, USA). The mitochondrial membrane potential assay kit with JC-1 was purchased from Beyotime (Shanghai, China). Antibodies to Smac, Bax, Bak, PARP, Bcl-xL, cIAP-1, cIAP-2, and β-Actin were purchased from SantaCruz Biotechnology (Santa Cruz, CA, USA). Antibodies to Caspase-8, Caspase-9, cytochrome c, XIAP, and COXII were purchased from Cell Signaling Technology (Beverly, MA, USA).
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4

Western Blotting of Cell Signaling Proteins

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Total protein was isolated and subjected to western blotting analysis as described previously. The following antibodies were used for the western blottings: rabbit polyclonal antibodies detecting XIAP, cIAP1, cIAP2, survivin, cyclin D1, CDK4, Akt, p44/p42 MAPK (Erk) and c-jun (Santa Cruz Biotechnology, Santa Cruz, CA, USA); EGFR, cyclin D3, phospho-serine473 Akt, phospho-p44/p42 MAPK (Erk), cleaved PARP (p85), caspase-3, phospho-p38, p38 and phospho-c-jun (Cell Signaling Technology Inc., Danvers, MA, USA); and β-actin (Sigma Chemical Co., St. Louis, MO, USA). After incubation with the corresponding secondary antibodies for 1 h, signals were detected using an Enhanced ChemiLuminescence kit (Thermo Fisher Scientific, Inc., Rockford, IL, USA) followed by autoradiography.
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5

AGS Cell Culture and Protein Analysis

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Human AGS cells from the American type culture collection (Rockville, MD, USA) were cultured in RPMI 1640 medium (Invitrogen Corp, Carlsbad, CA, USA) supplemented with 10% (v/v) fetal bovine serum (FBS) (GIBCO BRL, Grand Island, NY, USA), 1 mM L-glutamine, 100 U/mL penicillin, and 100 μg/mL streptomycin at 37°C in a humidified atmosphere of 95% air and 5% CO2. Antibodies against Bcl-2, Bid, Bcl-xL, phospho p53, p53, BAX, c-IAP-2, X-linked IAP (XIAP), Akt, phospho Akt, ERK, phospho ERK, and procaspase 3 were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibody against poly (ADP-ribose) polymerase (PARP) was purchased from PharMingen (San Diego, CA, USA). Antibody against β-actin was from Sigma (Beverly, MA, USA). Peroxidase-labeled donkey anti-rabbit and sheep anti- mouse immunoglobulin, and an enhanced chemiluminescence (ECL) kit were purchased from Amersham (Arlington Heights, IL). All other chemicals not specifically cited here were purchased from Sigma Chemical Co. (St. Louis, MO, USA).
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6

Antibody Validation Protocol

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The ANKRD49 rabbit polyclonal antibody was purchased from Abcam (U.K). The Flag mouse monoclonal, Beclin 1, LC3A/B, p65, p62 and GAPDH antibodies were purchased from Cell Signaling Technology (USA); the β-actin and cIAP2 antibodies were purchased from Santa Cruz Biotechnology (USA). HRP-conjugated secondary antibodies were obtained from Zhongshanjinqiao Company (China). Alexa Fluor 488-conjugated goat anti-rabbit antibody, Alexa Fluor 488 goat anti-mouse antibody and Alexa Fluor 546-conjugated goat anti-rabbit antibody were purchased from Life Technologies (USA).
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7

Evaluating Apoptotic Signaling in Chemoresistant Lung Cancer Cells

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Based on Lee et al. [25 (link)], Western blotting was conducted in A549/CR and H460/CR cells exposed to PGG (0, 6.25, 12.5 and 25 μM) for 48 h. In brief, whole cell lysates were lysed in ice-cold radioimmunoprecipitation assay (RIPA) buffer containing protease inhibitor cocktail, and isolated proteins in the supernatants were quantified and electrotransferred onto a Hybond enhanced chemiluminescence (ECL) transfer membrane. The membranes were probed with primary antibodies for PTEN, p-AKT, PARP, cellular inhibitor of apoptosis 1 (c-IAP1), c-IAP2, Survivin (Santa Cruz Biotechnologies, Santa Cruz, CA, USA), Caspase-8, -9, -7, Cleaved caspase-3, BAX, Bcl-2, Bcl-xL, p-ATR, p-Chk2, p-BRCA-1, p-H2AX (Cell signaling Technology, Danvers, MA, USA), p53 (Oncogene Research Products, San Diego, CA, USA), XIAP (Becton Dickinson and Company BD Biosciences, San Jose, CA, USA), β-actin (Sigma Aldrich, St Louis, MO) and horseradish peroxidase-conjugated secondary antibody. Additionally, nuclear extract was isolated for DNA damage proteins using an NE-PER Nuclear Cytoplasmic Extraction Reagent kit (Thermo Scientific, Rochester, NY, USA).
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8

Gamma-tocotrienol from palm oil: in vitro experiment

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A solution of palm oil-derived γ-T3 (50 mmol l−1; Davos Life Science, Singapore) was prepared in dimethyl sulphoxide for in vitro experiments, was stored in small aliquots at −20 °C, and then was diluted in cell culture medium as needed. Antibodies against p65, ICAM-1, cyclin D1, MMP-9, survivin, cIAP-1, cIAP-2, c-Myc, Bcl-2, and Bcl-xL were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Antibody against VEGF was obtained from Lab Vision/NeoMarkers (Fremont, CA, USA), and antibody against CXCR4 was purchased from Abcam (Cambridge, MA, USA). The liquid 3,3'-diaminobenzidine (DAB chromogen)-horseradish peroxidase used for immunohistochemical analysis was obtained from DakoCytomation (Glostrup, Denmark). Penicillin, streptomycin, Dulbecco's modified Eagle's medium (DMEM), RPMI-1640 medium, DMEM/F12, and fetal bovine serum (FBS) were obtained from Life Technologies (Carlsbad, CA, USA). All other chemicals were obtained from Sigma-Aldrich (St Louis, MO, USA), unless otherwise stated.
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9

Antitumor Effects of RTR-1 in Gastric Cancer

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For this study, BGC823 and SGC7901 cells (human gastric cancer cell lines) and LO2 cells (a human hepatic cell line) were obtained from the American Type Culture Collection (Rockville, MD) and were cultivated in DMEM supplemented with 10% foetal bovine serum in a 5% CO2 humidified atmosphere at 37°C. foetal bovine serum, DMEM, trypsin and EDTA were purchased from Gibco; MTT and DMSO were purchased from Sigma; annexin V-fluorescein isothiocyanate (FITC) and propidium iodide (PI) were purchased from BD Biosciences. Antibodies against p21, p53, c-IAP1, c-IAP2, GAPDH, Bcl-2, and Bcl-xL were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Antibodies against Mcl-1, Bax, Caspase-3, cleaved Caspase-3, Caspase-9, PARP, STAT3, p-STAT3, ATM, p-ATM, Chk2, p-Chk2 were purchased from Cell Signaling Technology (Danvers, MA). RTR-1, derived from Rhodomyrtus tomentosa root and provided by the Institute of Traditional Chinese Medicine and Natural Products of Jinan University, was dissolved in dimethyl sulfoxide (DMSO; Sigma, USA) at 100 mmol/L.
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10

Culturing MKN28 Gastric Carcinoma Cells

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The MKN28 human gastric carcinoma cells obtained from the American type culture collection (Manassas, VA, USA) were cultured in RPMI medium (Invitrogen Corp, Carlsbad, CA, USA) supplemented with 10% (v/v) fetal bovine serum (FBS) (GIBCO BRL, Grand Island, NY, USA), 1 mM L-glutamine, 100 U/mL penicillin, and 100 μg/mL streptomycin at 37 °C in a humidified atmosphere of 95% air and 5% CO2. Antibodies against TRAIL, DR4, DR5, Fas, FasL, XIAP, a cellular inhibitor of apoptosis protein-1 (cIAP-1), cIAP-2, caspase-3, -8, -9, Bcl-2, Bax, FlipL, FlipS, PARP, β-catenin, and PLCγ1 were purchased from Santa Cruz Biotechnology (Dallas, Texas, USA). An antibody against β-actin was from Sigma (Beverly, MA, USA). Caspase activity assay kits were obtained from R&D Systems (Minneapolis, MN, USA). An enhanced chemiluminescence (ECL) kit was purchased from Amersham (Arlington Heights, IL, USA). 5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethylbenzimidazolylcarbocyanine iodide (JC-1) were obtained from Calbiochem (San Diego, CA, USA). All other chemicals not specifically cited here were purchased from Sigma–Aldrich (St. Louis, MO, USA). All these solutions were stored at −20 °C. Stock solutions of 4,6-diamidino-2-phenylindole (DAPI, 100 μg/mL) and propidium iodide (PI, 1 mg/mL) were prepared in phosphate-buffered saline (PBS).
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