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38 protocols using avance 3 hd 500 mhz spectrometer

1

NMR Spectroscopy of Chitosan and Gelatin

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Spectra of chitosan and its derivate were obtained with a Bruker AVANCE III HD 500 MHz spectrometer (Bruker, Karlsruhe, Germany) equipped with a 5-mm TCI cryogenic probe at 303 K. Spectra were processed with BrukerTopspin software version 4.0.6. For preparation, 60 mg of chitosan sample was solubilized in 10 ml aqueous acid solution (Acetic acid 2%) and was mixed for 24 h at room temperature. Then, 1 ml of solution was lyophilized and solubilized in 0.6 ml D2O. The 1H NMR spectrum was acquired with presaturation of residual HDO, using 64 scans, an 8-s relaxation delay, and 32 k time-domain points. Spectra of gelatin and its derivate were also obtained with the Bruker AVANCE III HD 500 MHz spectrometer (Bruker, Karlsruhe, Germany) equipped with a 5-mm TCI cryogenic probe at 333 K and processed with BrukerTopspin software version 4.0.6. Samples of about 6 mg were dissolved in 0.6 ml of D2O. The 1H NMR spectra were acquired with presaturation of residual HDO, using 128 scans, a 25-s relaxation delay, and 32 k time-domain points.
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2

Enantiospecific NMR Profiling of Novel Cannabinoids

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NMR spectroscopy for the 5F-MDMB-PINACA, AB-FUBINACA and AMB-FUBINACA enantiomers was performed using a JEOL ECS-400 NMR spectrometer (JEOL, Tokyo, Japan) operating at 400 MHz. 1H-NMR (10 mg/mL in CDCl3), 13C-NMR (20 mg/mL in CDCL3). NMR spectroscopy for the AB-CHMINACA enantiomers was performed using a Bruker AVANCE III HD 500 MHz spectrometer (Bruker, Billerica, MA, USA) running under TopSpin v.3.2.5 and equipped with a QCI-F cryo-probe at a sample compartment temperature of 25°C. Samples were prepared in CDCl3 (~10 mg/mL).
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3

Synthesis and Characterization of Novel Compounds

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Compounds Lin1 and Fus4 were commercially available, whereas Compounds Lin2, Lin3, and Fus2 were produced by synthesis (reaction schemes and individual details of the synthetic procedure are indicated in Methods S1). Reagents and solvents were obtained from commercial suppliers and used without further purification, unless otherwise stated. Reactions were carried out under a positive atmosphere of nitrogen, unless otherwise stated. Reactions were monitored by thin layer chromatography (TLC) carried out on Merck TLC Silica gel 60 F254, using shortwave UV light as the visualizing agent and phosphomolybdic acid in EtOH and heat as developing agent. Flash column chromatography was performed using Kanto Chemical Silica gel 60 N (spherical, 40–50 μm). 1H NMR spectra were recorded on Varian Unity Plus 400 MHz spectrometer or Bruker Avance III HD 500 MHz spectrometer and were calibrated using residual undeuterated solvent as the internal references (CDCl3: 7.26 ppm; MeOH-d4: 3.31 ppm, acetone-d6: 2.05 ppm; DMSO-d6: 2.50 ppm). The following abbreviations were used to explain NMR peak multiplicities: s = singlet, d = doublet, t = triplet, q = quartet, p = pentet, m = multiplet, br = broad. Low-resolution and high-resolution mass spectra were recorded on Bruker micrOTOF focus II mass spectrometer using electrospray ionization time-of-flight (ESI-TOF) reflectron experiments.
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4

Characterization of Nanomaterials

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Unless otherwise stated, all reagents and chemicals were purchased from qualified suppliers with required purities. All glassware was dried before use. Nuclear magnetic resonance spectra were measured on a Bruker AVANCE III HD 500-MHz spectrometer with tetramethylsilane as the internal standard. Mass spectrometry was performed on an Agilent Technologies 6530 quadrupole time-of-flight liquid chromatograph-mass spectrometer. UV-vis absorption spectra were performed on a UV-2550 scanning spectrophotometer (Shimadzu, Japan). Fluorescent spectra were recorded on a Hitachi F-2700 equipped with a 1-cm quartz cell. Dynamic light scattering measurements were performed at 25 °C on Zestier Nano ZS (Malvern Instruments Ltd, UK).
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5

NMR Characterization of PPS Samples

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Spectra were obtained with a Bruker AVANCE IIIHD 500 MHz spectrometer (Bruker, Karlsruhe, Germany) equipped with a 5 mm TCI cryo-genic probe, at 303K. Spectra were processed with BrukerTopspin software version 3.2. About 20 mg PPS samples were dissolved in 0.6 ml of deuteriumoxide. 1H NMR spectra were aquired with presaturation of residual HDO, using 16 scans, 12s relaxation delay, number of time domain points of 32k. COSY and TOCSY were acquired with mixing time of 90 ms. HSQC and HMBC data were acquired in the phase-sensitive mode by using time proportional phase incrementation (TPPI) or States-TPPI experiment. Spectra were collected as 256/512 TD experiments each with 2k complex data points and 8 scans over a spectral width of 5 kHz.
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6

NMR and LC-MS Characterization Protocol

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Unless indicated otherwise, organic reagents and solvents were used as provided by Sigma-Aldrich. POPA, POPC, POPG, and POPS were purchased from Avanti Polar Lipids and stored in CHCl3 at −20 °C. NMR solvents were obtained from Cambridge Isotope Labs and NMR spectra were acquired at room temperature on either a Varian DirectDrive 600-MHz spectrometer or a Bruker AVANCE III HD 500-MHz spectrometer. Chemical shifts are reported in ppm and spectra were referenced to the residual solvent signal. In the case of solvent mixtures, the NMR spectra were referenced to the major solvent component. LC-MS was performed using a Dionex RSLC coupled to a Bruker micrOTOF Q II with a Dionex Acclaim RSLC 120 C18 2.2um 2.1 × 100 mm reversed-phase column. Mobile Phase A = water with 0.1 formic acid; Mobile Phase B = acetonitrile with 0.1% formic acid. Flow rate = 0.4 mL/min and column temp = 50 degrees. The initial mobile phase was 95% A/5% B which was ramped to 100%B. The LC eluent entered the electrospray source of the micrOTOF Q II and was analyzed by the Q-TOF mass analyzer. Full synthetic details can be found in the ESI file.
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7

Heparin Source Identification by NMR

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1H-NMR spectra were measured on a Bruker AVANCE III 600 MHz spectrometer or on a Bruker AVANCE III HD 500 MHz spectrometer (Karlsruhe, Germany), equipped with 5 mm TCI cryogenic probes. The experiments were recorded at 298 K by using the Bruker library zg pulse sequence and the following parameters: number of scans 16, dummy scans 4, relaxation delay 12 s, spectral width 16 ppm, transmitter offset 4.7 ppm. After exponential multiplication (line broadening of 0.3 Hz), the spectra were Fourier transformed, phased, baseline corrected, and calibrated on the TSP signal.
The spectrum can be accepted only if the following test is satisfied: the width half height of TSP is ≤ 1.4 Hz.
The intensity of the following signals was measured:
The ratio r(1:2) between peaks 1 and 2, and the ratio r(3:2) between peaks 2 and 3 were calculated and used to distinguish the different heparin sources.
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8

Copper and EGCG Interactions with α-Synuclein

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α-Syn samples were dissolved in Tris-HCl (20 mM, pH 7.4), and then mixed with CuCl2 or EGCG aqueous solutions to obtain the protein concentration of 50 μM. The samples were incubated shakily at 37 °C for 58 h, and then D2O was added in the ratio of 90% H2O/10% D2O for 1H-NMR measurement at 25 °C. 1H-NMR spectra were recorded on an AVANCE III HD 500 MHz spectrometer (Bruker, Karlsuhe, Germany). Water signal was suppressed using the WATER-GATE pulse sequence [58 (link)].
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9

Involutin Production and NMR Analysis

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To produce sufficient amounts of involutin for NMR analysis, P. involutus was grown for 2 months on liquid malt extract (2%, w/v) in Petri dishes containing glass beads as described above. Metabolites were extracted from the culture filtrates and purified by HPLC (Dionex Ultimate 3000, Thermo Fisher Scientific) using a Kinetex C18 column and conditions as described above. The mass spectrum of the peak putatively assigned to involutin was recorded in negative mode (ESI) using an LTQx Orbitrap (Thermo Fisher Scientific). The 1H NMR spectrum of the collected fraction was recorded on a Bruker Avance III HD 500 MHz spectrometer (Bruker, Billerica, Massachusetts, USA), equipped with a 5 mm broadband probe, optimized for 1H observation. All spectra were recorded with the same settings, i.e., an acquisition time of 2 s, a relaxation delay of 6 s, and 512 scans. The involutin sample obtained from the HPLC purification was dissolved in methanol-d4 (99.8%; Deutero GmbH, Kastellaun, Germany), and chemical shifts in standard 1H experiments were referenced to the resonances of residual protons in deuterated methanol.
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10

Synthesis and Characterization of MOM-CyHQ-CHO

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All reagents and solvents were purchased from commercial sources and used without further purification. MOM-CyHQ-CHO was prepared as previously described [27 (link)]. All reactions were carried out using glassware except for the MO couplings, which were performed in microcentrifuge tubes. Anhydrous reactions were performed at a positive pressure of dry nitrogen gas. Anhydrous THF was obtained by distillation over Na/benzophenone. Purifications were carried out using flash chromatography on an Isolera Spektra 4 with Biotage SNAP cartridges packed with KP-Sil silica. 1H NMR and 13C NMR spectra were recorded using a Bruker Avance™ III HD 500 MHz spectrometer (Billerica, MA, USA). UV spectra for MO quantification were recorded on a Nanodrop 2000c. HPLC was performed on an Agilent Infinity series system with an autosampler and diode array detector. Separations were performed using Zorbax eclipse C-18 reverse phase columns 150 × 4.6 mm with 8 μm particle size and gradient elution at a flow rate of 0.5 mL min−1: eluent A was acetonitrile and eluent B was water. The analysis started with 2% of eluent A, which was linearly increased up to 100% over 20 min, and then kept at 100% for 5 min. HRMS/LC-MS was performed on an Agilent 6540 HD Accurate Mass QTOF/LC/MS (Santa Clara, CA, USA) with electrospray ionization (ESI) using a fragmentor voltage of 175 V.
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