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8 protocols using rabbit anti mouse antibody

1

Immunohistochemistry of Bone and Intestine

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The bone and intestinal sections were immersed in 10 mM citrate buffer for antigen retrieval. The bone sections were blocked and incubated with the mouse anti-OCN (1:1,000, Abcam, Cambridge, MA, USA). The intestinal sections were blocked and incubated with anti-Claudin-2 overnight at 4°C. After washing with PBS, the sections were incubated with goat anti-mouse antibody (1:1000, Abcam) or rabbit anti-mouse antibody (1:1000, Abcam) at room temperature for 1 hour. The osteoid matrix areas were measured using Image J software (National Institutes of Health, Bethesda, MD, USA). Five microscopic fields were chosen randomly from each sample.
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2

Immunofluorescent Staining of BMDMs

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BMDMs were fixed for 20 min in 2% PFA at room temperature. After washing, the cells were blocked in 1% BSA (Sigma-Aldrich, Cat no: A3803-10G) diluted in PBS with 0.02% Triton-x for 1 h at room temperature, followed by 1-h room temperature incubation with primary antibody (Table 1). Secondary antibody (Table 1) was applied for 1 h room temperature after thorough washes. DAPI (Sigma-Aldrich, Cat No: D9542) was applied after further thorough washes. Antibody conditions are described in Table 1. Fibronectin was also stained in BMDMs using rabbit anti-mouse antibody (Abcam, Cat No: ab2413) followed by Alexa Fluor® 488 AffiniPure Donkey Anti-Rabbit IgG (H+L) (Jackson ImmunoResearch, Cambridge, UK, Cat No: 712-545-150). Incubation with secondary antibody alone was used as negative control.
Total cells were counted using DAPI+ cells, and myofibroblasts were defined as α-SMA+ cells with a fibroblastic cell shape (elongated, stress fibres present). Each treatment group was performed in triplicate, in each independent experiment. Three images per well were taken at random. The data was confirmed by an independent, blinded researcher.
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3

Multimarker Immunohistochemistry in Kidney

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Immunohistochemical detection of macrophages, lymphocytes and myofibroblasts (using α-SMA) was performed on paraffin-embedded kidney sections. Briefly, after dewaxing and rehydration, a microwave pre-treatment in citrate buffer (pH 6.2) was performed to unmask antigens present in the renal tissue. Tissue sections were then incubated for 1 h with primary antibodies: anti-macrophages (rat anti-mouse F4/80 antibody, Abcam, UK), anti-lymphocytes (rabbit anti-mouse CD3 antibody, Abcam, UK) and anti-α-SMA (rabbit anti-mouse antibody, Abcam, UK). After rinsing in PBS, slides were exposed for 30 min to the appropriate secondary antibody. Kidney sections were finally incubated with ABC complex (Vector Laboratories, UK) for 30 min and bound peroxidase activity was detected with the DAB kit (DAKO, Belgium). Counterstaining was performed with hemalun and Luxol fast blue.
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4

Protein Extraction and Immunoassay Analysis

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Total protein was extracted to be used in ELISA assays for mouse Nrf2 (MBS7612500, MyBioSource), IL-1β (ab197742; Abcam), iNOS (MAB9502, R&D Systems), tumor necrosis factor alpha (TNFα, ab208348; Abcam), IL-6 (ab222503, Abcam), arginase 1 (ARG1, ab269541; Abcam), interferon gamma (IFNɣ, ab282874; Abcam), and CD163 (ab272204; Abcam). Immunocytochemistry for cleaved caspase 3 and caspase 9 was done using rabbit anti-mouse antibodies (Abcam).
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5

Umbilical Cord Protein Expression Analysis

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The umbilical cord tissues were homogenized (100 μL), placed in the reaction tube, lysed using 1 mL of protease-containing cell lysate for 30 min at 4 °C, shaken once every 10 min at 4 °C, and centrifuged at 6000 r/minute for 20 min. After the lipid layer was discarded, the supernatant was taken as protein extract. Protein concentration was measured utilizing a bicinchoninic acid kit (20201ES76, Yeasen Biotechnology, Shanghai, China). Proteins were loaded and separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis followed by transferring onto the polyvinylidene fluoride membrane. The membrane was blocked with 5% skim milk at room temperature for 1 h and incubated with primary rabbit anti-mouse antibodies (Abcam Inc., Cambridge, UK) to HDAC2 (ab32117, 1:2000), p53 (ab131442, 1:1000), p53 Ac (acetyl K373) (ab75754, 1:1000), PUMA (ab33906, 1:2000), Ki67 (ab92742, 1:5000), PCNA (ab152112, 1:1500), MMP-2 (ab37150, 1:2000), MMP-9 (ab73734, 1:2000), Bax (ab32503, 1:2000), Bcl-2 (ab59348, 1:1000), and GAPDH (ab8245, 1:5000) overnight at 4 °C. The next day, the membrane was reacted with horseradish peroxidase-labeled goat anti-rabbit immunoglobulin G (IgG) (ab6721, 1:5000) at room temperature for 1 h. The membrane was developed by ECL imager. Quantity One software was used to quantify the protein-expression level with GAPDH as an internal control.
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6

Investigating Cellular Mechanisms in DSS-Induced Inflammation

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We purchased the following: DSS (purity >99%, Sigma-Aldrich, St. Louis, MO, USA); ELISA kits for interleukin (IL)-4, IL-6, IL-10 and tumor necrosis factor (TNF)-α (R&D Systems, Minneapolis, MN, USA); superoxide dismutase (SOD) assay kits (ab65354), myeloperoxidase (MPO) activity assay kits (ab105136), reactive oxygen species (ROS) assay kits (ab186029), ATP assay kits (ab83355), anti-rat F4/80(ab16911), cytokeratin-18 (ab133263), Platelet endothelial cell adhesion molecule-1 (CD31, ab222783), ATP4a (ab231729), Cytochrome P450 Family 21 Subfamily A Member 2 (CYP21A2, ab232809), Hydroxy-Delta-5-Steroid Dehydrogenase, 3 Beta and Steroid Delta-Isomerase 2 (HSD3B2, ab75710), hypoxia-inducible factor 1-alpha (HIF-1α; ab179483), PDK4 (ab214938), sodium potassium ATPase (Na+/K+ ATPase, ab76020), voltage-dependent anion channel 1 (VDAC1/Porin, ab15895), and goat anti-rabbit antibodies, rabbit anti-mouse antibodies (Abcam, Cambridge, UK); mitochondrial ROS (mtROS) detection assay kits (Cayman Chemical Co., 701600, MI, USA); and lipofectamine 2000 transfection reagent (#11668019, ThermoFisher, Waltham, MA, USA). The rat ATP4a gene silencing plasmid (designed by targeting NM_012509.1 gene) was constructed and synthesized by GK Gene (Shanghai, China).
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7

Immunofluorescence Staining of Cellular Components

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The cells were immersed in PBS and seeded in glass slides at a concentration of 1 × 104/ml. The slides were fixed in 4% paraformaldehyde for 15 minutes, then immersed in PBS 3 times for 3 minutes each time, and subsequently in 0.5% Triton X‐100 in PBS at room temperature for 20 minutes. Next, the cells were blocked with 5% skim milk powder in PBST for 30 minutes at room temperature, and the following diluted primary antibodies were added: anti‐Lamin B, BOSTER, China; anti‐β‐actin, Abcam, USA; anti‐Lamin A, Abcam, USA. The antibodies used were rabbit anti‐human and diluted at a concentration of 1:200. The cells were incubated overnight at 4°C and subsequently with the fluorescent secondary antibody (1:100, mouse anti‐rabbit antibody, Abcam, USA) for 1 hour at room temperature. Finally, the slides were washed in PBST 3 times for 3 minutes each and observed under a fluorescence microscope.
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8

Western Blot of Cellular Proteins

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RIPA lysis buffer (plus PMSF) was used to lyse the cells to extract the total proteins, which were separated by a polyacrylamide gel electrophoresis and transferred into the PVDF membrane. After membrane blocking, the corresponding primary antibodies (1:1000, rabbit anti‐human, anti‐Lamin A/Lamin C/β‐actin, Abcam, USA, and anti‐P16/CDK1/MMP2/MMP9, BOSTER, China) were added to the membrane that was incubated overnight at 4°C. Next, the secondary antibody (1:8000, mouse anti‐rabbit antibody, Abcam, USA) was added to the membrane that was incubated at room temperature for 1 hour. Finally, the bands were imaged using Gel imaging system.
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