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8 protocols using hpa008784

1

Evaluating FUS Reversion in MyoDiCre Mice

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To evaluate the efficiency of MyoDiCre mice to revert the FusΔNLS allele to wild type, MyoDiCre/+ males were crossed to FusΔNLS/+ females, and timed matings were set up between MyoDiCre/+; FusΔNLS/+ males in the offspring and FusΔNLS/+ females. Fixed TA muscles were dissected from MyoDiCre/+; FusΔNLS/ΔNLS (experimental), FusΔNLS/ΔNLS and MyoDiCre/+ (control) pups, washed in PBS and incubated overnight in 30% sucrose in PBS at 4°C.
Muscles were embedded in OCT and 16 μm thick cryosections were made with a cryostat. For immunostaining, sections were incubated at room temperature and hydrated with PBS (2 x 10 min). Sections were incubated with rabbit anti-FUS (Sigma, HPA008784, 1/150) primary antibody in PBS with 2% donkey serum and 0.1% Triton X-100 at 4°C overnight. Sections were subsequently washed with PBS (2 x 10 min), followed by Alexa-488-conjugated anti-rabbit secondary antibody (A27034, Invitrogen) in PBS with 2% donkey serum and 0.1% Triton X-100 for 2h at room temperature. Sections were washed in PBS (3 x 10 min) and incubated with Alexa Fluor 647-conjugated phalloidin (Cell Signaling, 8940, 1/20) for 30 min at room temperature. Sections were washed in PBS (3 x 10 min) and mounted in mounting medium with DAPI (VectaShield) for confocal imaging.
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2

Immunohistochemical Profiling of Neurodegenerative Diseases

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Formalin fixed paraffin embedded tissue sections (5μm thick) were acquired through the Alzheimer’s Disease Research Center at the Massachusetts General Hospital (Charlestown, MA) or the University of British Columbia (41 (link), Vancouver, Canada). Available demographics information for the three de-identified cases used in the current study can be found in Supplemental Table 1. Tissues were stained and processed by multiple approaches. For the images in the main text Figure 7, the protocol described in Lee et al was used with anti-FUS (Sigma Aldrich, HPA008784), together with either a hematoxylin nuclear counterstain for immunohistochemistry or a DAPI nuclear counterstain for immunofluorescence64 (link). For the images in Supplemental Figure 17, mouse anti-Nup62 (BD Bioscience, BDB610497) was diluted to 1:15047 (link). Immunohistochemistry was performed using the Dako Omnis automated immunostainer with primary incubation for 60 mins following heat-induced antigen retrieval and developed using Dako Envision Flex/HRP. Data collection and analysis were not performed blind to the conditions of the experiment
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3

Histopathological Analysis of Neurodegenerative Markers

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Brain and spinal cord tissue were fixed in 10 % formalin and embedded in paraffin. Sections (10 μm thick) were cut from the cerebrum, midbrain, pons, medulla oblongata, cerebellum, and spinal cord. The sections were stained with hematoxylin and eosin as well as Klüver–Barrera stain. Immunohistochemistry was performed for tau (AT8, 1:1,000; Thermo Scientific), α-synuclein (pSyn#64, 1:1,000; Wako), TDP-43 (409/410, 1:1,000; original antibody [22 (link)]), FUS protein (HPA008784, 1:1,000; Sigma-Aldrich; and A300-302A, 1:500–1,000; Bethyl Laboratories), Ewing sarcoma protein (EWS, 1:100; Santa Cruz Biotechnology), and TATA-binding protein-associated factor 15 (TAF15, 1:50; Bethyl Laboratories). Primary antibody labelling was visualized using 0.2 % 3,3′-diaminobenzidine as the chromogen in combination with an Envision Plus kit (Dako Japan, Tokyo), according to the manufacturer’s instructions.
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4

Western Blot Protein Detection Protocol

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For Western blot analysis, cells were harvested with a plastic cell scraper, mixed with Laemmli buffer, and incubated at 95°C for 10 min. Proteins were then resolved on a SDS–PAGE gel at 150 V and transferred to a nitrocellulose membrane by Western blotting at 300 mA. Membrane was blocked with 2% milk in PBST and stained with anti‐FUS antibody (HPA008784, Sigma‐Aldrich) diluted 1:10,000 in 2% milk in PBST. The membrane was then stained with HRP‐conjugated secondary antibody (Sigma‐Aldrich) diluted 1:5,000 in 2% milk in PBST. Membranes were covered with the substrate Luminata Crescendo (Millipore), and chemiluminescence was detected on Amersham Hyperfilm ECL (GE Healthcare).
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5

Protein Profiling of Brain Fractions

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Equal amounts of each brain fraction were loaded into a 5–20% SDS–polyacrylamide gel (e-PAGEL®, E-T520L, Atto), and the proteins were separated and transferred to polyvinylidene difluoride membranes (Immobilon®-P Transfer Membrane, Merck). The membranes were blocked with 2.5% goat serum in Tris Buffered Saline with Tween 20 (TBST) and incubated with the following antibodies at 4 °C overnight: anti-⍺-syn (D37A6, Cell Signaling Technology), anti-tau (T57120, BD Transduction), anti-MAP2 (M9942, Sigma-Aldrich), anti-phosphorylated-synuclein (pSyn #64, Wako), anti-phosphorylated-tau (PHF13 S396, 10-444, Cell Signaling Technology; Phospho-Tau S262, #44-750G, Invitrogen; AT8 S202/T205, 00-1566, Innogenetics), anti-FUS (HPA008784, Sigma-Aldrich; 11570-1-AP, Proteintech), and anti-TDP43 (G400, Cell Signaling Technology) antibodies in 2.5% goat serum/TBST (1:1000). The membranes were washed in TBST for 10 min twice and incubated in a horseradish peroxidase secondary antibody (Immobilon® Forte Western HRP Substrate) diluted with 2.5% goat serum/TBST (1:2000) for 1 h, at room temperature. The immunoreactive proteins were visualized via the application of the substrate for enhanced chemiluminescence (Luminata, Millipore). The signals were acquired using ImageQuant LAS-4000 (GE Healthcare).
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6

Immunofluorescence Staining of Spinal Cord

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For immunofluorescence staining, the spinal cord was cut using a vibratome (30 μm). ChAT antibody (1:100, Millipore, AB144p), FLAG-M2 (1:100, Sigma-Aldrich, F3165), and FUS (1:100, Sigma-Aldrich, HPA008784) were used to stain the neurons and FUS proteins in the spinal cord. Sections were analyzed using a laser-scanning confocal microscope (FV3000; Olympus). The MetaMorph software (Molecular Devices) was used for quantification.
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7

Evaluating FUS Reversion in MyoDiCre Mice

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To evaluate the efficiency of MyoDiCre mice to revert the FusΔNLS allele to wild type, MyoDiCre/+ males were crossed to FusΔNLS/+ females, and timed matings were set up between MyoDiCre/+; FusΔNLS/+ males in the offspring and FusΔNLS/+ females. Fixed TA muscles were dissected from MyoDiCre/+; FusΔNLS/ΔNLS (experimental), FusΔNLS/ΔNLS and MyoDiCre/+ (control) pups, washed in PBS and incubated overnight in 30% sucrose in PBS at 4°C.
Muscles were embedded in OCT and 16 μm thick cryosections were made with a cryostat. For immunostaining, sections were incubated at room temperature and hydrated with PBS (2 x 10 min). Sections were incubated with rabbit anti-FUS (Sigma, HPA008784, 1/150) primary antibody in PBS with 2% donkey serum and 0.1% Triton X-100 at 4°C overnight. Sections were subsequently washed with PBS (2 x 10 min), followed by Alexa-488-conjugated anti-rabbit secondary antibody (A27034, Invitrogen) in PBS with 2% donkey serum and 0.1% Triton X-100 for 2h at room temperature. Sections were washed in PBS (3 x 10 min) and incubated with Alexa Fluor 647-conjugated phalloidin (Cell Signaling, 8940, 1/20) for 30 min at room temperature. Sections were washed in PBS (3 x 10 min) and mounted in mounting medium with DAPI (VectaShield) for confocal imaging.
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8

Antibody Panel for Protein Detection

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The following commercial antibodies were used: EWSspecific mouse monoclonal antibody G5 sc28327 (Santa Cruz) and rabbit polyclonal antibody H-60 sc28865 (Santa Cruz); FUS-specific mouse monoclonal antibody 4H11 (Santa Cruz) and rabbit polyclonal A300-294A (Bethyl) and HPA008784 (Sigma); HA-specific mouse monoclonal antibody HA.11 (Covance); MonomethylArginine (R*GG)-specific rabbit monoclonal antibody D5A12 #8711 (Cell Signalling); MonomethylArginine-specific monoclonal rabbit antibody Me-R4-100 #8015 (Cell Signalling); PRMT1-specific rabbit monoclonal EPR3292 (Abcam); TAF-15-specific rabbit antibody TAF15-308A (Bethyl), rabbit polyclonal antibody SAB2102361 (Sigma) and mouse monoclonal antibody H00008148 (Abnova); Transportin-specific rabbit antibody clone D45 (Sigma); α-Tubulin-specific mouse monoclonal antibody clone B-5-1-2 (Sigma).
The secondary antibodies for immunoblotting were horseradish peroxidase (HRP)-conjugated goat anti-mouse, anti-rabbit or anti-rat IgG (Promega) or mouse anti-rat IgG2a, IgG2b and IgG2c (home made).
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