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6 protocols using raptor arc 18 column

1

Quantification of Vitamins in Freeze-Dried Fruits

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Freeze dried fruit powder was analyzed for vitamin C using a Thermo Vanquish UHPLC-PDA system (Thermo Fisher Scientific, Waltham, MA, USA) with a Waters® Acquity HSS T3 column (150 × 2.1 mm, 1.8 μm) (Waters, Rydalmere, NSW, Australia) according to the method reported by Phan et al. [125 (link)], with slight modifications. Briefly, 100 mg fruit powder was extracted with 2 mL solvent containing 8% acetic acid, 3% metaphosphoric acid and 1 mM ethylenediaminetetraacetic acid tetrasodium salt three times under vortexing, sonication, shaking and centrifugation. Supernatants were combined and filtered using a 0.22 um GHP membrane filter (Pall, Melbourne, VIC, Australia) before analysis. Dehydroascorbic acid (DHAA) in the sample was reduced using DL-Dithiothreitol. Total vitamin C (L-AA + DHAA) was determined at 245 nm and 25 °C with isocratic elution (aqueous 0.1% formic acid at 0.2 mL/min).
Folate vitamers were analyzed following a stable isotope dilution assay according to the method described by Striegel, Chebib, Netzel and Rychlik [61 (link)], using a UHPLC-MS/MS (Shimadzu, Rydalmere, NSW, Australia), equipped with a Raptor ARC-18 column (Restek, Bellefonte, PA, USA). The folate derivatives measured included pteroylmonoglutamic acid (PteGlu), 5-methyltetrahydrofolate (5mTHF), 5-formyltetrahydrofolate (5fTHF), 10-formyl-pteroylglutamic acid (10f PteGlu) and tetrahydrofolate (THF).
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2

Analysis of Phenolic and Steryl Ferulates

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All the extracts were analyzed using a HP 1200L liquid chromatograph equipped with a DAD detector (Agilent Technologies, Palo Alto, CA, USA) with a Raptor ARC-18 column (150 × 3 mm, 5 µm, Restek, USA). The gradient method for the phenolic extracts was the same proposed by The HPLC-DAD-MS analyses of phenolic and steryl ferulates extracts were performed using the same column and chromatographic conditions previously described. HPLC-DAD-MS system was from Waters and composed by 2695 HPLC, 2996 PAD and 4 micro MS equipped with Zspray ESI source. The ESI interface parameters were capillary 3.50 kV, cone 76 V, source temperature 120 °C, desolvation gas temperature 350 °C, cone gas flow 25 (L/h), desolvation gas flow 370 (L/h). Data were acquired in negative ion mode from 150 m/z to 800 m/z, at 0.5 sec/scan rate. The chromatograms were recorded at 330 nm.
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3

Enzymatic Characterization of Mycobacterial Arr

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Reactions were performed in a 100-μl final volume of Arr buffer (20 mM Tris-HCl [pH 7.9], 40 mM KCl, and 0.5 mM MgCl2). M. smegmatis or M. abscessus Arr (10 μM) was mixed with Rif or KglA (100 μM) in 80 μl of Arr buffer at 37°C for 10 min. A 20-μl aliquot of NAD+ in Arr buffer was added (250 μM final) and incubated for 1 h at 37°C. The reaction was quenched with 500 μl of methanol (MeOH). Methanol was then evaporated under negative pressure and the reaction mixture analyzed by LC-MS. All analytical separations were performed on an Agilent 1260 HPLC instrument by injection of 1 to 5 μl of sample onto a Raptor ARC-18 column (150 mm by 2.1 mm) (Restek) or an Ultra C4 column (150 mm by 2.1 mm) operated at 0.2 μl/min and then eluted using a 30-min linear gradient from 5% to 100% of acetonitrile. The mobile phase was supplemented with 0.1% formic acid. Mass spectra were recorded in positive-ion mode on a Bruker MicrOTOF II time-of-flight mass spectrometer.
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4

HPLC-UV Analysis of Serum Metabolites

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HPLC-UV was performed on aliquots of serum extract (20 μL) with a Thermo Scientific UltiMate 3000 system (Thermo Fisher Scientific Inc., Waltham, MA, USA) equipped with a pump, autosampler, column compartment, and RS variable wavelength UV diode array detector. The chromatographic separation of metabolites was performed using a Raptor AR C18 Column (150 × 4.6 mm, 2.7 μm particle size) (Restek Co., Bellefonte, PA, USA) under isocratic elution. The mobile phase contained 0.05 mol/L KH2PO4 and 10% acetonitrile (v/v). The UV detector was set at variable wavelengths (220, 240, 260, 280 nm). The concentrations of plasma metabolites were calculated from peak areas and standard calibration curves using HPLC software.
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5

HPLC-DAD and LC-MS/MS Analysis of Unlabeled Analytes

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All LC and MS conditions were as previously described [22 (link)]. Briefly, the concentration and purity of unlabeled analytes, which were prepared new before each extraction, were determined using a Shimadzu HPLC/DAD system (Shimadzu, Kyoto, Japan) equipped with a reversed phase column (C18 EC, 250 × 3 mm, 5 µm, 100 Å, precolumn: C18, 8 × 3 mm, Machery-Nagel, Düren, Germany). The mobile phases for gradient solution were (A) 0.1% acetic acid and (B) methanol.
LC-MS/MS measurements of samples were performed on a Shimadzu Nexera X2 UHPLC system (Shimadzu, Kyoto, Japan) equipped with a Raptor ARC-18 column (2.7 µm, 100 × 2.1 mm, precolumn: 2.7 µm, 5 × 2.1 mm, Restek, Bad Homburg, Germany). The mobile phases for the binary gradient consisted of (A) 0.1% formic acid and (B) acetonitrile with 0.1% formic acid at a flow rate of 0.4 mL/min.
The LC was interfaced with a triple quadrupole ion trap mass spectrometer (LCMS-8050, Shimadzu, Kyoto, Japan). Samples were measured in the ESI positive mode as previously described [22 (link)].
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6

HPLC-UV Analysis of Serum Metabolites

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Serum extract samples (20 μL) were also analyzed using an HPLC-UV system (Thermo Scientific UltiMate 3000, Thermo Fisher Scientific Inc., Waltham, MA, USA) with a Raptor AR C18 column (150 × 4.6 mm, 2.7 μm particle size) purchased from Restek Co., (Bellefonte, PA, USA). The isocratic mobile phase was composed of 0.05 mM KH2PO4 and 10% acetonitrile (v/v) at a flow rate of 1 mL/min and UV detection at 220, 240, 260, and 280 nm. Peak identification and plasma concentration of metabolites, calculated from peak areas and standard calibration curves, were determined using HPLC software (Dionex Corp., Sunnyvale, CA, USA, 7.3).
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