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Rat igg isotype control

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The Rat IgG isotype control is a laboratory reagent used to establish background staining levels in flow cytometry or immunohistochemistry experiments. It serves as a negative control to differentiate specific antigen binding from non-specific binding.

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8 protocols using rat igg isotype control

1

Immune Cell Depletion for Tumor Growth

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For depletion of immune cell subsets in vivo, mice were immunized as the schedule described in therapeutic immunotherapy and then injected intravenously with 100 μg anti-CD4 mAbs (eBioscience, San Diego, CA, USA), anti-CD8 mAbs (eBioscience), anti-NK mAbs (eBioscience) and isotype control rat IgG (eBioscience) at 1 day before tumor challenge and 6 day, 13 day after tumor challenge respectively. Tumor growth in different groups was measured24 (link) for six times every 2 days using the formula area=length×width and the survival curve could be surveyed.
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2

Bacterial Endotoxin and Cytokine Assays

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Ultrapure Escherichia coli O111:B4 LPS and CpG were from Invivogen. Recombinant mouse IL-23 and IL-1β, neutralizatiing antibody for IL-23p19 and isotype control (rat IgG) were purchased from eBioscience. Blocking antibody for mouse IL-1β was obtained from Leinco Technologies. Kanamycin (Km)-resistant wild-type Citrobacter rodentium strain DBS120 (pCRP1::Tn5) was a gift of Dr. David Schauer (Massachusetts Institute of Technology, Massachusetts). The isogenic C. rodentium Δler, Δtir, Δeae, ΔescN, ΔescU mutants were generated from DBS120. Salmonella enterica serovar Typhimurium strain SL1344 was a gift from Dr. D. Monack (Stanford University, California). For preparation of heat-killed C. rodentium, the pathogen was cultured overnight in LB medium, inoculated into DMEM at a 1:50 dilution and cultured under standard cell culture conditions (37°C with 5% CO2) for 8 hours without shaking. Bacteria were then harvested and washed twice with ice-cold PBS, and heat inactivated at 60°C for 30 min. Complete killing of bacteria was confirmed by 72 h incubation at 37°C on bacteria growth plates.
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3

Pathogen Preparation and Characterization

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Ultrapure Escherichia coli O111:B4 LPS and CpG were from Invivogen. Recombinant mouse IL-23 and IL-1β, neutralizating antibody for IL-23p19 and isotype control (rat IgG) were purchased from eBioscience. Blocking antibody for mouse IL-1β was obtained from Leinco Technologies. Kanamycin (Km)-resistant wild-type C. rodentium strain DBS120 (pCRP1::Tn5) was a gift of Dr David Schauer (Massachusetts Institute of Technology, Massachusetts). The isogenic C. rodentium Δler, Δtir, Δeae, ΔescN, ΔescU mutants were generated from DBS120. Salmonella enterica serovar Typhimurium strain SL1344 was a gift from Dr D. Monack (Stanford University, California). For preparation of heat-killed C. rodentium, the pathogen was cultured overnight in Luria-Bertani (LB) medium, inoculated into DMEM at a 1:50 dilution and cultured under standard cell culture conditions (37 °C with 5% CO2) for 8 h without shaking. Bacteria were then harvested and washed twice with ice-cold PBS, and heat inactivated at 60°C for 30 min. Complete killing of bacteria was confirmed by 72 h incubation at 37 °C on bacteria growth plates.
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4

Isolating and Analyzing Immune Cells

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Cell suspensions of the dissected iLNs from the recipient mice were obtained by pressing the tissues through a 70-µm mesh in PBS with 2% FCS. Cell numbers and viability were determined using a CASY TT Cell Counter (Roche). Cells were washed and transferred into 96-well V-bottom plates. Surface Ab staining was performed for 2 h at 4°C in PBS with 2% FCS, in the presence of 2.4G2 hybridoma (hb-197; ATCC) tissue culture supernatant and Rat IgG isotype control (10700; Invitrogen) to block nonspecific binding via Fc interactions. After incubation, samples were washed twice with PBS with 2% FCS and acquired on an Aurora Spectral Cytometer (Cytek). Cells for single-color controls were prepared in the same manner as the fully stained samples. Flow cytometry data were analyzed using FlowJo v10 software (Tree Star). The Abs used are listed in Table II.
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5

Isolation and Characterization of Immune Cells

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Cell suspensions of the dissected iLNs from the recipient mice were obtained by pressing the tissues through a 70 μm mesh in PBS with 2% FCS. Cell numbers and viability were determined using a CASY TT Cell Counter (Roche). Cells were washed and transferred into 96-well v-bottom plates. Surface antibody staining was performed for 2 hours at 4 °C in PBS with 2% FCS, in the presence of 2.4G2 hybridoma (ATCC hb-197) tissue culture supernatant and Rat IgG isotype control (Invitrogen, #10700) to block non-specific binding via Fc interactions. Following incubation, samples were washed twice with PBS with 2% FCS and acquired on an Aurora Spectral Cytometer (Cytek). Cells for single colour controls were prepared in the same manner as the fully stained samples. Flow cytometry data were analysed using FlowJo v10 software (Tree Star). The antibodies used are listed in Table 2.
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6

Phenotypic Analysis of Enriched B Cells

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A small aliquot (1-2 x 106) of enriched B cells from the young adult or aged donor mice was stained for phenotypic analysis prior to transfer. Briefly, cells were stained in 96-well v-bottom plates. Surface antibody staining was performed for 2 hours at 4 °C in PBS with 2% FCS, in the presence of 2.4G2 hybridoma (ATCC hb-197) tissue culture supernatant and Rat IgG isotype control (Invitrogen, #10700) to block non-specific binding via Fc interactions. Following incubation, samples were washed twice with PBS with 2% FCS, before they were fixed with the eBioscience Foxp3/Transcription Factor Staining Buffer (#00-5323-00) for 30 min at 4°C. The samples were then washed twice with 1 x permeabilisation buffer (eBioscience #00-8333-56) and stained with the intracellular antibody mix in permeabilisation buffer at 4°C overnight. Following overnight incubation, the samples were washed twice with 1 x permeabilisation buffer and washed once with PBS with 2% FCS, before they were acquired on an Aurora Spectral Cytometer (Cytek). Cells for single colour controls were prepared in the same manner as the fully stained samples. The antibodies used for the surface and intracellular staining are listed in Table 1.
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7

Enriched B Cell Phenotypic Analysis

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A small aliquot (1–2 × 106) of enriched B cells from the young adult or aged donor mice was stained for phenotypic analysis before transfer. In brief, cells were stained in 96-well V-bottom plates. Surface Ab staining was performed for 2 h at 4 °C in PBS with 2% FCS, in the presence of 2.4G2 hybridoma (hb-197; ATCC) tissue culture supernatant and Rat IgG isotype control (10700; Invitrogen) to block nonspecific binding via Fc interactions. After incubation, samples were washed twice with PBS with 2% FCS, before they were fixed with the eBioscience Foxp3/Transcription Factor Staining Buffer (00-5323-00) for 30 min at 4°C. The samples were then washed twice with 1× permeabilization buffer (00-8333-56; eBioscience) and stained with the intracellular Ab mix in permeabilization buffer at 4°C overnight. After overnight incubation, the samples were washed twice with 1× permeabilization buffer and washed once with PBS with 2% FCS, before they were acquired on an Aurora Spectral Cytometer (Cytek). Cells for single-color controls were prepared in the same manner as the fully stained samples. The Abs used for the surface and intracellular staining are listed in Tables I.
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8

Quantifying Surface Receptor Expression

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For quantification of surface receptor expression, cells were trypsinized and brought to single-cell suspension in FACS buffer (1× PBS + 2% FBS). Primary antibody was added at 1 μg/million cells in 100 μL total solution (for mouse cells: rat anti-mouse αv integrin (BD Pharmingen 551380) or rat IgG isotype control (Invitrogen); for human cells: mouse anti-αvβ3 integrin, direct PE conjugate (BioLegend 304406) or mouse IgG κ chain isotype control, direct PE conjugate (BioLegend 400112); for neuropilin-1 staining in all cells, rabbit anti-NRP-1 (Novus Biologicals NBP1-40666) or normal rabbit IgG isotype control (R&D)) and incubated for one hour on ice. For direct fluorophore-conjugated primary antibodies, cells were washed with PBS and resuspended in FACS buffer. Otherwise, after washing the cells 2× in PBS, cells were incubated with secondary fluorescently-tagged antibody (Invitrogen) for 45 minutes and washed 1× in PBS. Cells were analyzed on BD LSR-II or Fortessa HTS flow cytometers. Data were analyzed in FlowJo (TreeStar Software).
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