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Target specific probes

Manufactured by Thermo Fisher Scientific
Sourced in United States

Target-specific probes are short, single-stranded DNA or RNA molecules designed to hybridize to a specific DNA or RNA sequence. They are used to detect and quantify the presence of a particular target in a sample.

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3 protocols using target specific probes

1

Quantifying Hypoxia-Induced Gene Expression

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Following hypoxia treatment, NHNE cells were harvested for total RNA extraction. The cells were homogenized in Trizol Reagent (Sigma-Aldrich, St. Louis, MO, USA), and real-time PCR was performed according to the manufacturer's protocol. The primers (β-actin fwd: 5' GCCAACCGC GAGAAGATG-3', rev: 5'ACGGCCAGAGGCGTA CAG-3'; ZO-1 fwd: 5'-TGGTGTCCTACCTAAT TCAACTCA-3', rev: 5'-CGCCAGCTACAAATATTC CAACA-3'; E-cadherin fwd: 5'-ATAGAGAACGCATT GCCACATACA-3', and rev: 5'-TTCTGATCGGTTACC GTGATCA-3') were synthesized, and quantitative reverse transcription-PCR was performed using the TaqMan® universal PCR master mix (Applied biosystems, Foster City, CA, USA). Target-specific probes were purchased from Applied Biosystems. All reactions were performed in triplicate using different batches of NHNE cells. The relative mRNA quantities were determined using the comparative threshold method, and the results were normalized against β-actin.
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2

Quantitative RT-PCR Analysis of Skin Biopsies

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Quantitative real-time RT-PCR analysis was performed as previously described.13 (link) Briefly, after isolation of total RNA from skin biopsies by TRIzol (Invitrogen, Karlsruhe, Germany) extraction, 4 µg of total RNA was treated with 10 U of DNase I (Roche) and reverse-transcribed into cDNA. About 25 ng of cDNA was amplified in a volume of 25 µl in the presence of TaqMan universal master mix (Applied Biosystems, Darmstadt, Germany), 0.3 µM gene-specific TaqMan probe and 0.24 µM gene-specific forward and reverse primers. Primers and target-specific probes were obtained from Applied Biosystems, and gene-specific PCR products were measured by means of an ABI PRISM 7000 (Applied Biosystems) during 40 cycles. Target gene expression was normalised to the expression of 18 S rRNA.
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3

Quantitative MicroRNA Detection in Rats

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TaqMan® MicroRNA Assays (Applied Biosystems, CA, USA) were used to quantitatively detect the levels of miR-301a using target-specific probes (000528, Applied Biosystems) according to the manufacturer’s instructions. RNU6B (001973, Applied Biosystems) was used to normalize the data. The rat specific primers were summarized in Supplemental Table 1. The quantitative RT-PCR reaction was performed on an ABI 7500 Fast Real-Time PCR System.
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