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Amira 3d software 6

Manufactured by Thermo Fisher Scientific
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Amira 3D Software 6.0 is a comprehensive visualization and analysis platform designed for the processing, analysis, and interpretation of 3D data. It provides a range of tools and functionalities for visualizing and exploring complex datasets from various sources, including micro-CT, electron microscopy, and light microscopy.

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Lab products found in correlation

Uchicago paleoct, by GE Healthcare (2 mentions)

Close spelling variants of this product

Amira software (198 citations) Amira 6.4 (133 citations) Amira 3D software (12 citations) Amira 3D (4 citations) Amira 6 3D Software package (2 citations)

2 protocols using amira 3d software 6

1

High-Resolution Fin Skeletal Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
After skeletal staining, fins were separated from the body. Fins were stained using a 0.5% (weight/volume) PMA (Phosphomolybdic acid) stain for 17 hours followed by two washes using ddH2O. Specimens were placed into 1.5mL microcentrifuge tubes with ddH2O and kept overnight to settle. On the following day, specimens were scanned using the UChicago PaleoCT (GE Phoenix v/tome/x 240kv/180kv scanner), at 50 kVp, 160 µA, no filtration, 5x-averaging, exposure timing of 1000 ms per image, and a resolution of 6.000 µm per slice (216 µm3 per voxel). Scanned images were analyzed and segmented using Amira 3D Software 6.0 (FEI).
Letelier J., de la Calle-Mustienes E., Pieretti J., Naranjo S., Maeso I., Nakamura T., Pascual-Anaya J., Shubin N., Schneider I., Martinez-Morales J.R, & Gómez-Skarmeta J.L. (2018). A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins. Nature genetics, 50(4), 504-509.
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2

High-Resolution Fin Skeletal Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
After skeletal staining, fins were separated from the body. Fins were stained using a 0.5% (weight/volume) PMA (Phosphomolybdic acid) stain for 17 hours followed by two washes using ddH2O. Specimens were placed into 1.5mL microcentrifuge tubes with ddH2O and kept overnight to settle. On the following day, specimens were scanned using the UChicago PaleoCT (GE Phoenix v/tome/x 240kv/180kv scanner), at 50 kVp, 160 µA, no filtration, 5x-averaging, exposure timing of 1000 ms per image, and a resolution of 6.000 µm per slice (216 µm3 per voxel). Scanned images were analyzed and segmented using Amira 3D Software 6.0 (FEI).
Letelier J., de la Calle-Mustienes E., Pieretti J., Naranjo S., Maeso I., Nakamura T., Pascual-Anaya J., Shubin N., Schneider I., Martinez-Morales J.R, & Gómez-Skarmeta J.L. (2018). A conserved Shh cis-regulatory module highlights a common developmental origin of unpaired and paired fins. Nature genetics, 50(4), 504-509.
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