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3 protocols using clone 1a4

1

Histological Analysis of Tissue Samples

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Tissues were fixed in 10% neutral buffered formalin (Sigma) for 24 h and transferred to 70% ethanol. Tissues were embedded in paraffin, and 3–5 µm sections were processed for H&E staining, immunohistochemistry and co-immunofluorescence using standard protocols as previously described [30 (link)]. The following antibodies and kits were used: SPARC (R&D Systems, AF942, 1:100, RRID: AB_2286625), α-SMA (Dako, Clone 1A4, 1:250, RRID: AB_2335694), CC3 (Cell signaling, 9664L, 1:100, RRID: AB_2070042) and Ki67 (Thermo Scientific, RM-9106, 1:200, RRID: AB_2341197), CD31 (BD Biosciences, 553370, 1:100, RRID: AB_394816). Pictures were taken with 40× magnification with an Olympus DP27 camera and the Olympus cellSens Entry 1.12 software.
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2

Comprehensive Immunohistochemistry and Immunofluorescence Protocol

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Primary antibodies included: anti-α-actin (Abcam, ab5694; IHC and IF, 1:100; WB, 1:1000); Dako actin (Smooth Muscle) Clone 1A4; anti-cleaved Caspase-3 (Cell Signaling #9661; IHC, 1:50; WB, 1:1000); anti-CD31 (Abcam, ab28364; IHC and IF, 1:50); anti-CD34 (R&D, AF4117; IF, 1:100; WB, 1:1000); anti-CD68 (ED1; Abcam, ab31630; IHC, 1:200; WB, 1:1000); anti-Eph-B4 (Santa Cruz, sc-5536; IF, 1:50); anti-Ephrin-B2 (Novus, NBP1-48610; IHC, 1:50); anti-GAPDH (Cell Signaling, 14C10; WB, 1:2000); anti-IL-10 (Abcam, ab9969; IF, 1:100); anti-Ki67 (Abcam, ab15580; IHC and IF, 1:100; WB, 1:1000); anti-phospho-mTOR (Cell Signaling, #2971; IHC, 1,50; WB,1:1000); anti-mTOR (Cell Signaling, #2972; WB, 1:1000); anti-transglutaminase 2 (TGM2; #37557; IF, 1:100); anti-VEGFR2 (ABCAM, ab2349; IF, 1:100; WB,1:1000); Secondary antibodies used for IF were: donkey anti-goat Alexa-Fluor-488, donkey anti-rabbit Alexa-Fluor-488, donkey anti-rabbit Alexa-Fluor-568, donkey anti-mouse Alexa-Fluor-568 and chicken anti-mouse Alexa-Fluor-488 conjugated antibodies from Invitrogen (1:1000). For IHC, sections were incubated with EnVision reagents for 1 h at room temperature and treated with Dako Liquid DAB + Substrate Chromogen System (Dako). Finally, the sections were counterstained with Mayer’s hematoxylin.
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3

Histological Analysis of Tissue Samples

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Tissues were fixed in 10% neutral buffered formalin for 24 h and transferred to 70% ethanol. Tissues were embedded in paraffin and 4 μm sections were processed for H&E staining, picrosirius staining, immunohistochemistry (IHC) and co‐immunofluorescence (Co‐IF) using standard protocol as previously stated.18 The following antibodies were used: SPARC (R&D Systems, AF942, 1:100, Research Resource Identifiers (RRID): Antibody (AB)_2286625), α‐SMA (Dako, Clone 1A4, 1:250, RRID: AB_2335694), CC3 (Cell signalling, 9664L, 1:100, RRID: AB_2335694) CCL2 (Invitrogen, #MA5‐17040, Clone 2D8, 1:500, RRID: AB_2538512), CD45 (BD Biosciences, 550539, 1:100, RRID: AB_2174426).
Pictures were taken with 40x magnification for H&E and IHC staining and 20x magnification for Co‐IF staining. Olympus DP27 and Olympus confocal FV1000 cameras were used for visualization.
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