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5 protocols using cbl202

1

Immunohistochemical Analysis of LAT1 Expression

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LAT1 IHC was performed on frozen and paraffin-embedded tumor sections. Frozen sections (10 μm) were dried, fixed in 4% paraformaldehyde, quenched in 50 mmol/L NH4Cl, and permeabilized by 0.5% Triton X-100. FFPE sections were deparaffinized, rehydrated, and heat-induced antigen retrieval was performed using citrate buffer (pH 6.0). LAT1 was detected using mouse anti-mouse/human LAT1 (Santa Cruz Biotechnology, sc-374232) or rabbit anti-human LAT1 (Abcam, ab208776). Endothelial cells were detected using rat anti-mouse CD31 (BD Pharmingen, 550274) and mouse anti-human CD31 (Abcam, 187377) antibodies. MDA-MB-231-BR3 cancer cells were detected using anti-vimentin (Millipore, CBL202 or sc-6260, Santa Cruz Biotechnology) or with anti-human nuclei (Millipore, MAB1281) antibodies. Primary antibodies were detected using secondary antibodies labeled with fluorochromes Alexa Fluor 488, Alexa Fluor 594, Alexa Fluor 568 (Molecular Probes). Cell nuclei were detected with DAPI. Alexa Fluor 488 anti-mouse Fc-gamma subclass 2a specific (Jackson ImmunoResearch Laboratories, 115–545–206) was used as a secondary antibody for detection of human vimentin (Millipore, CBL202). Whole skulls were fixed in a combined fixation/decalcification solution (Cal-Ex II, Fisher Scientific, CS511–1D) for 72 hours, sectioned, and stained with hematoxylin and eosin.
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2

Visualizing Vimentin Aggregates in AAV-Treated Fibroblasts

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GAN fibroblasts were treated with AAV and assayed for IF arrangement as described.22 (link) Primary antibodies used were anti-vimentin (1:1,000) (Millipore, CBL202) and anti-GFP (1:500) (Millipore, 3080). Secondary antibodies were goat anti-mouse Alexa 594 (1:10,000) (Invitrogen, A11032) and goat anti-rabbit Alexa 488 (1:10,000) (Invitrogen, A11008). The presence of vimentin aggregates were scored visually, with >500 cells typically assessed per coverslip.
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3

Detecting Brain Metastasis Cells

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Frozen sections (10 μm) were dried, fixed in 4% paraformaldehyde, quenched in 50 mM NH4Cl and permeabilized by 0.5% Triton X-100. MDA-MB-231-BR3 cancer cells were detected using antibodies against human vimentin (Millipore, CBL202) followed by a secondary Alexa Fluor 488 anti-mouse Fc-gamma subclass 2a specific antibody (Jackson ImmunoResearch Labs, 115–545-206). The following secondary antibodies were used in other applications—Alexa Fluor 488, Alexa Fluor 594, Alexa Fluor 568 (Molecular Probes). MCF7 cells were detected by anti-Pan-cytokeratin antibody (Novus Biologicals, NBP2-33200) or mouse monoclonal anti-human estrogen receptor alpha antibody (Santa Cruz Biotechnology, sc-8002-AF594). Endothelial cells were detected using rat anti-mouse CD31 (BD Pharmingen, 550274) or rat anti-mouse PV1 (BioRad, MCA2539T) antibodies. Cell nuclei were detected with DAPI. Whole skulls were fixed for 72 h using a combined fixation and decalcification protocol (Cal-Ex II, Fisher Scientific, CS511-1D), sectioned and stained with hematoxylin and eosin.
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4

Multimodal Detection of Cancer Cells

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Frozen sections (10 μm) were dried, fixed in 4% paraformaldehyde, quenched in 50 mM NH4Cl and permeabilized by 0.5% Triton X-100. MDA-MB-231-BR3 cancer cells were detected using antibodies against human vimentin (Millipore, CBL202) followed by a secondary Alexa Fluor 488 anti-mouse Fc-gamma subclass 2a specific antibody (Jackson ImmunoResearch Labs, 115–545-206). The following secondary antibodies were used in other applications - Alexa Fluor 488, Alexa Fluor 594, Alexa Fluor 568 (Molecular Probes). MCF7 cells were detected by anti-Pan-cytokeratin antibody (Novus Biologicals, NBP2–33200) or mouse monoclonal anti-human estrogen receptor alpha antibody (Santa Cruz Biotechnology, sc-8002-AF594). Endothelial cells were detected using rat anti-mouse CD31 (BD Pharmingen, 550274) or rat anti-mouse PV1 (BioRad, MCA2539T) antibodies. Cell nuclei were detected with DAPI. Whole skulls were fixed for 72 hours using a combined fixation and decalcification protocol (Cal-Ex II, Fisher Scientific, CS511–1D), sectioned and stained with hematoxylin and eosin.
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5

Immunofluorescence and IHC Analysis of E-cadherin and Vimentin

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Tissue sections were fixed in 4% paraformaldehyde, washed with PBS and permeated with 0.1% Triton X-100. Samples were then incubated with blocking solution (Normal goat serum, cat. 5425, Cell signaling) for 1 h at room temperature. The tumor tissue slides were stained with mouse anti-human E-cadherin (1:100, MABT26, Millipore, MA) and rat anti-human Vimentin (1:100, CBL202, Millipore, MA) at 4 °C overnight. For immunofluorescence, Cy5-conjugated goat anti-mouse immunoglobulin G (IgG) (1:500, cat. A10524, Thermo Fisher Scientific) and Cy5-conjugated goat anti-rat IgG (1:500, cat. A10525, Thermo Fisher Scientific) were used and incubated for 1 h at room temperature. Nucleus is counterstained with DAPI. Images were obtained by Olympus laser scanning confocal microscope (Olympus FV1000, America, Inc.) and analyzed with ImageJ software. For immunohistochemistry, the reaction was visualized by the Dako Liquid DAB+ Substrate-Chromogen Solution (Dako, cat. K3468).
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