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5 protocols using myocilin

1

Dex-Induced Protein Expression Analysis

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Cells were treated with Dex for five days then lysed in RIPA lysis buffer (25mM Tris, 150mM NaCl, 1% NP-40, 1% sodium deoxycholate, and 0.1% SDS. The lysis buffer was supplemented with protease and phosphatase inhibitor cocktails (Thermofisher Scientific). The BCA assay (Pierce, Fisher Scientific) was use to quantify protein. Proteins were separated by molecular weight using SDS polyacrylamide gel electrophoresis, transferred onto a PVDF membrane (Bio-Rad Laboratories, Inc. Hercules, CA), and probed against myocilin and β-Actin (loading control) (Santa Cruz Biotechnology, Santa Cruz, CA).
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2

Immunofluorescence Staining of Cultured Cells

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Cultured cells were washed with PBS, fixed in 4% paraformaldehyde at room temperature for 15 minutes, and washed with PBS twice. Then cells were permeabilized with 0.2% Triton X-100 for 10 minutes and blocked in 1% BSA for 30 minutes at room temperature. Cells were incubated overnight at 4°C with primary antibodies, including GRP78 (1:100; Santa Cruz Biotechnology), myocilin (1:50; Santa Cruz Biotechnology), and Alexa Fluor 633 Phalloidin (1:500; Life Technologies, Carlsbad, CA, USA). After three washes, fluorescent secondary antibodies (Invitrogen) and nuclear dye 4′,6-diamidino-2-phenylindole (DAPI; Sigma-Aldrich Corp.) were added and incubated for 2 hours at room temperature. After additional washes, cells were mounted using fluorescence mounting medium (ThermoFisher). Samples were visualized and captured using a confocal microscope (Olympus, Center Valley, PA, USA) with a 60× oil objective. Microscopic analysis was carried out using the FluoView software (Olympus).
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3

Antibody Sources for ECM and Cellular Markers

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Antibodies were purchased from the following sources: fibronectin (catalog # Ab2413; Abcam, Cambridge, MA, USA), KDEL (catalog # Ab12223; Abcam), Collagen type I (catalog # NB600-408; Novus Biologicals, Littleton, CO, USA), Collagen type IV (catalog # SAB4500369; Sigma-Aldrich Corp., St. Louis, MO, USA), Laminin (catalog # L9393; Sigma-Aldrich), Elastin (catalog # MAB 2503; Millipore, Billerica, MA, USA), Myocilin (catalog # SC-21243; Santa Cruz Biotechnology, Dallas, TX, USA), ATF-4 (C/EBP-homologous protein; catalog # Sc-200, Santa Cruz Biotechnology), CHOP (catalog # 13172, Novus Biologicals), MMP-2 (catalog # NB200-193; Novus Biologicals), MMP-9 (catalog # SC-10737; Santa Cruz Biotechnology), and GAPDH (Glyceraldehyde 3-phosphate dehydrogenase; catalog # 3683; Cell Signaling Technology, Danvers, MA, USA).
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4

Stem Cell Marker Immunofluorescence and qPCR

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Cells were cultured on coverslips and fixed with 4% paraformaldehyde. Cell permeabilization was achieved using 0.1%Triton X-100 incubation for 20 minutes and blocking with 1% BSA for one hour. Cells were treated overnight at 4°C with primary antibodies for OCT4-FITC (SantaCruz Bioscience), alkaline phosphatase-PE, SSEA4-APC (eBioscience), SSEA1-PerCP (Biolegend), HNK1-PECY7 (Invitrogen), NGFR-APC (BD Pharmingen), CHI3L1 (R&D Systems), and myocilin (SantaCruz). Phalloindin-555 was used to stain F-actin and DAPI was employed as a nuclear stain and samples were acquired using laser scanning confocal microscope (Olympus).
Real-time PCR:
RLT buffer was used for lysis of cultured cells and an RNA purification kit (RNeasy Mini Kit, Qiagen) was used for isolation of total RNAs. RNAs were reverse transcribed using High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems). SYBR green (Applied Biosystems) chemistry was used for qPCR. Primer3 was used to design primers for Housekeeping gene 18S rRNA (Forward: CCCTGTAATTGGAATGAGTCCAC, Reverse: GCTGGAATTACCGCGGCT), myocilin (forward: AAGCCCACCTACCCCTACAC; reverse: TCCAGTGGCCTAGGCAGTAT), CHI3L1 (forward: CCTTGACCGCTTCCTCTGTA; reverse: GTGTTGAGCATGCCGTAGAG), ANGPTL7 (forward: GCACCAAGGACAAGGACAAT; reverse: GATGCCATCCAGGTGCTTAT).
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5

Western Blot Analysis of Protein Expression

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TM cells were lysed in RIPA buffer (P0013B, Beyotime) for 30 min on ice. Protein concentrations were quantified using a BCA kit (23227, Thermo). Total protein aliquots (40 μg) were subjected to 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to the PVDF membrane (Millipore). Membranes were blocked in 5% non-fat milk for 2 h, then incubated with primary antibodies at 4 °C overnight. After washing three times with 0.1% TBST, membranes were incubated with appropriate secondary antibodies. Signals were detected using an ODYSSEY Clx system. The following antibodies were used: myocilin (sc-515500, sc-137233, Santa Cruz Biotechnology), GAPDH (sc-25778, Santa Cruz biotechnology), Grp78 (3177, Cell Signaling Technology), Grp 94 (2104, Cell Signaling Technology), p62 (5114, Cell Signaling Technology), LC3B (43566, Cell Signaling Technology), IRDye 800CW goat anti-rabbit IgG (926-32211, LI-COR), and IRDye 800CW goat anti-mouse IgG (926-32210, LI-COR).
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