The largest database of trusted experimental protocols

15 protocols using mitotracker red

1

Mitochondrial and ER response to H2O2

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were pre-treated with or without 10 μM spermidine, 5 mM NAC, or 5 μM BAPTA-AM for 1 h before incubation for 24 h in the presence or absence of 300 μM H2O2. To assess the function of mitochondria and the endoplasmic reticulum, we stained cells with 100 nM MitoTracker Red and 1 μM ER-Tracker Red probe, respectively, before observation using a fluorescence microscope (Carl Zeiss) per the manufacturer’s instructions.
+ Open protocol
+ Expand
2

Mitochondrial Morphology and Membrane Potential Evaluation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To evaluate mitochondrial morphology, living RPTECs were incubated with 250 nM fluorescent probe MitoTracker Red (#M7512; Thermo Fisher, Invitrogen) for 30 min, at 37 °C, 5% CO2. Nuclei were counterstained with NucBlue Live ReadyProbes (Hoechst; #R37605; Thermo Fisher, Invitrogen) according to the manufacturer’s protocol. At the end of probes incubations, living cells were examined by confocal inverted laser microscopy (LSM 510 Meta, Zeiss) and mitochondrial fragmentation was expressed as the % of Hoechst positive cells with fragmented mitochondria compared to elongate one identified by MitoTracker Red staining in 10 random fields per sample.
Mitochondria membrane potential was evaluated by exposing RPTECs to 5 μM JC-1 (#T3168; Thermo Fisher, Invitrogen) for 30 min, at 37 °C, 5% CO2. JC-1 exhibits potential-dependent accumulation in mitochondria indicated by a fluorescence shift from green (cytoplasm) to red (mitochondria). At the end of probe incubations, living cells were examined by confocal inverted laser microscopy (LSM 510 Meta, Zeiss) and the quantification of JC-1 red and green areas (Pixel2 (link); Image J 1.40g software) was performed in 10 random fields per sample and mitochondria polarization was expressed as the ratio between red and green fluorescent area.
+ Open protocol
+ Expand
3

Mitochondrial Dynamics in Caenorhabditis elegans

Check if the same lab product or an alternative is used in the 5 most similar protocols
The animals were incubated for 4 h at 20 °C with 10 μM MitoTracker Red (Invitrogen, Carlsbad, CA, USA), which is a fluorescent probe that accumulates in active mitochondria. After MitoTracker staining, the animals were immobilized in 10 µL of M9 buffer containing 100 µg/mL tetramisole on a poly L-lysine-coated slide, and the animals were dissected for oocyte isolation. Live images of stained animals were observed under a fluorescence microscope (Zeiss Axioscope, Oberkochen, Germany), and the average pixel intensity of MitoTracker Red fluorescence was measured using ImageJ software. To measure MMP, tetramethylrhodamine methyl ester (TMRM; Thermo Fisher Scientific, Waltham, MA, USA) staining was performed, as previously described [30 (link)]. Briefly, TMRM was added to NGM agar at a final concentration of 30 μM, and the plates were dried overnight and seeded with E. coli OP50 for 24 h in the dark. Animals from each group (young, aged, and NAM+aged) were transferred to TMRM plates, incubated at 20 °C for 15 h, and dissected for oocyte isolation. For whole-body animal staining, each group of mothers was incubated in TMRM plates for 15 h. Images were obtained under the same exposure, and the fluorescence intensity was measured using ImageJ software by selecting oocytes and whole animals.
+ Open protocol
+ Expand
4

Visualizing Mitochondrial Dynamics in HepG2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HepG2 cells were loaded with MitoTracker Red (500 nM, Cell Signaling Technology, USA) to label the mitochondria as described [29 (link)]. Briefly, after treated as indicated, the HepG2 cells were loaded with MitoTracker Red and imaged by laser confocal scanning microscopy (Zeiss, Germany) under the excitation (Ex) and emission (Em) wavelength of 644 nm and 665 nm, respectively. To observe the mitochondrial fusion, HepG2 cells were labeled with MitoTracker Red and then fixed with 4% paraformaldehyde (Beyotime, China), permeabilized with 0.25% Triton X-100 (Beyotime, China) and blocked with 5% goat serum (Beyotime, China). Then, cells were incubated with primary antibody against OPA1 at 4 °C overnight and incubated with Alexa Fluor® 488 goat anti-rabbit IgG secondary antibody (1:200, Beyotime, China). Finally, nuclei were counterstained with DAPI. Samples were analyzed using laser confocal scanning microscopy (Zeiss, Germany).
+ Open protocol
+ Expand
5

Mitochondrial Mass Quantification in CD4+ T Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
CD4+ T cells were stimulated with anti-CD3/CD28 beads (2 cells per 1 bead) for 72h. Cells were incubated with MitoTracker Red (Invitrogen, M7512) (50 nM) at 37°C for 30 mins. After staining, cells were washed twice, and mitochondrial mass was quantified as the intensity of MitoTracker Red using the LSM710 microscope system with the ZEN 2010 software (Carl Zeiss).
+ Open protocol
+ Expand
6

Tracking Mitochondrial Transfer from MSCs to Chondrocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
PHaM mitoDendra2 MSCs were cultured, rinsed thrice with PBS and serum starved for 24 h. Murine chondrocytes were cultured to 80% confluence on a chamber slide system (Lab-Tek: 177429), then stained with Mitotracker Red (100 nM; Thermofisher: M7512) and incubated with MSC-derived MVs for 12 h under serum starvation. Chondrocytes were then fixed on the chambered slide with 4% PFA, coverslipped with fluoromount containing DAPI nuclear stain. Chondrocyte cultures were imaged on a Zeiss LSM880 inverted i880 multiphoton microscope with a ×63 oil immersion objective using sequential, 3-channel scans; 359/457 nm (DAPI), 490/507 nm (Dendra2) 581/644 nm (Mitotracker Red) excitation/emission, respectively. Z stacks were performed (14–20 slices at a step size of .38 μm) on a subset of co-fluorescent cells to investigate if MSC-derived fluorescent mitochondria were localized to the MT networks within recipient chondrocytes.
+ Open protocol
+ Expand
7

Mitochondrial Membrane Potential Visualization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Loss of mitochondrial membrane potential over time was visualized using MitoTracker Red (Molecular Probes) or the reversible cationic dye tetramethylrhodamine ethyl ester (TMRE) (Molecular Probes). Details are provided in Text S1. Cells were imaged by DIC microscopy and by the use of the DsRed (MitoTracker Red) or TexasRed (TMRE) channel on a Zeiss Axio Imager.MI microscope, with the exposure time remaining constant between samples. For the MitoTracker Red-treated cells, brightness was also quantified on a CytoFlex flow cytometer (Beckman).
+ Open protocol
+ Expand
8

Mitochondrial Staining of Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For mitochondrial staining, cells were seeded on Matrigel-treated cover slips at the appropriate densities. The next day, cells were incubated for 30 min at 37 °C in regular media in the presence of 200 nM MitoTracker Red (Invitrogen) for staining of mitochondria and 1 μg ml−1 DAPI (Invitrogen) to stain the cell nuclei. Thereafter, cells were fixed in 4% paraformaldehyde and visualized by a confocal microscopy (Zeiss, Oberkochen, Germany) with excitation at 578 nm and emission at 598 nm for MitoTracker Red, and excitation at 359 nm and emission at 461 nm for DAPI detection. Each condition was done in two technical replicates with three biological replicates (n=6).
+ Open protocol
+ Expand
9

Imaging Mitochondrial Morphology

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were stained with Mitotracker Red (MitoRed, 200 nM; Molecular Probes) at 37°C for 30 min prior to fixation. Images were obtained using Leica TCS SPE confocal scanning microscopes with 63 × 1.4 NA Apochrome objective lens (Carl Zeiss Micro-Imaging, Inc.) by the mean of excitation wavelength settings at 543 nm for Mitotracker Red. Mitochondrial morphology was visualized by MitoRed staining and post-acquisition processing was performed using NIH Image J software for assessing mitochondrial density and length.
+ Open protocol
+ Expand
10

Subcellular Localization of DEK504 in Arabidopsis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ORF of Dek504 without the stop codon was amplified from the maize inbred line B73 and cloned into the expression vector pEarleyGate101 to construct the p35S::DEK504-eYFP plasmid using the gateway technology (Invitrogen, Carlsbad, CA, USA). This vector was transformed into Arabidopsis thaliana Col-0 using the floral dip method [65 (link)], and the lateral root hairs of the transgenic plants were used for YFP observation. MitoTracker Red (Invitrogen) was used to label the mitochondria. Fluorescent signals were observed under a confocal laser scanning microscope (Zeiss LSM700; Carl Zeiss, Oberkochen, Germany) using eYFP (514 nm excitation and 519–559 nm emission wavelength), mCherry (587 nm excitation and 590–630 nm emission wavelength), and Mito Tracker Red (581 nm excitation and 644 nm emission wavelength).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!