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151 protocols using anti mir nc

1

Regulation of circ-RBMS1 and FBXO11 in lung cells

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The circ-RBMS1 siRNA (si-circ-RBMS1) and scrambled siRNA (si-NC), pCD5-ciR circ-RBMS overexpressing plasmid (circ-RBMS) and negative control (pCD5-ciR), FBXO11 specific-siRNA (si-FBXO11) and scrambled siRNA (si-NC), pcDNA3.1 FBXO11 overexpressing plasmid (FBXO11) and negative control (pcDNA), miR-197-3p mimic (miR-197-3p), miR-197-3p inhibitor (anti-miR-197-3p), mimic-control (anti-miR-NC), and inhibitor-control (anti-miR-NC) were provided by GenePharma (Shanghai, China). After pretreating with 3% CSE at 37°C for 24 h, transient transfection in 16HBE cells with 100 nM of siRNAs, 100 ng of plasmids, or 50 nM of miRNA mimics or inhibitors was conducted when cells were grown to 60–70% confluence using Lipofectamine 2000 (Invitrogen, San Diego, CA, USA).
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2

NEAT1, miR-370-3p Regulation Protocol

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si-RNA against NEAT1 (si-NEAT1), miR-370-3p mimic (miR-370-3p) and miR-370-3p inhibitor (anti-miR-370-3p), as well as the corresponding controls (si-control, miR-NC, anti-miR-NC), were obtained from GenePharma (Shanghai, China). NEAT1 overexpression plasmid (pcDNA-NEAT1), Irak2 overexpression plasmid (named as pcDNA-Irak2) and matched control (pcDNA-control) were acquired from RiboBio (Guangzhou, China). Cell transfection was performed using Lipofectamine 3000 reagent (Invitrogen, Carlsbad, CA, USA) following the standard manufacturer's protocol.
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3

Talin-1 Regulation by miR-16-5p

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The oligonucleotides miR-16-5p mimic, miR-16-5p inhibitor (anti-miR-16-5p), and siRNA against talin-1 (si-TLN1) were provided by Genepharma (Shanghai, China), as well as their negative controls (miR-NC, anti-miR-NC and si-NC). The overexpression vector pcDNA3.1 (pcDNA) was purchased from Addgene (Cambridge, MA, USA) to construct pcDNA-TLN1 vector. The T98G and A172 cells were seeded in 6-well plate till to 80% confluence prior to cell transfection. And, 50 nM of oligonucleotides or 2 μg of vectors were mixed with Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA) following to the manufacturer’s protocols. When co-transfection, half nucleotides were utilized. The sequences of si-TLN1 were 5ʹ-UGUUAUUUCCUCCUUUUUCUC-3ʹ (sense) and 5ʹ-GAAAAAGGAGGAAAUAACAGG-3ʹ (antisense), and si-NC was 5ʹ-UUCUCCGAACGUGUCACGUTT-3ʹ (sense) and 5ʹ-ACGUGACACGUUCGGAGAATT-3ʹ (antisense).
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4

Regulation of circ_0051079 and miR-625-5p

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The small interfering RNAs of circ_0051079 (si-circ_0051079#1, 5′-AGTCATCATTGCCAAGACTGT-3′; si-circ_0051079#2 5′-ATTGCCAAGACTGTGCCCTGT-3′; si-circ_0051079#3 5′-TCATTGCCAAGACTGTGCCCT-3′), specific miR-625-5p mimics (miR-625-5p, 5′-AGGGGGAAAGUUCUAUAGUCC-3′) and inhibitors (anti-miR-625-5p, 5′-GGACUAUAGAACUUUCCCCCU-3′), and controls (si-NC, miR-NC and anti-miR-NC) were synthesized by GenePharma (Shanghai, China). The coding sequence of TRIM66 was synthesized and introduced into the pcDNA 3.1 vector (vector) to build the overexpression plasmid of TRIM66 (TRIM66). The lentiviral expressing small hairpin RNA of circ_0051079 (sh-circ_0051079) or sh-NC were packaged using polybrene (GenePharma). Then, cells growing in 24-well plates were transfected with 20 pmol siRNA, 0.8 μg plasmid, 100 nM miRNA mimics or 200 nM miRNA inhibitors using Polyplus-transfection® (Illkirch, France), referring to the standard methods.
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5

Chondrocyte Transfection and LPS Treatment

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The primary chondrocyte were seeded into six-well plates (Corning, Inc.) at a density of 5x104 cells/well for 24 h prior to transfection, and 293T cells were pre-seeded in 24-well plate at a density of 5x103 cells/well. For overexpression purposes, the coding domain sequence of FUT4 was inserted into pcDNA3.1 vector (Invitrogen; Thermo Fisher Scientific, Inc.), and equal amount of empty vector was used as negative control. miR-200b mimic and its negative control miR-NC mimic were purchased from Shanghai GenePharma Co., Ltd.. For knockdown purposes, anti-miR-200b and anti-miR-NC were provided by Shanghai GenePharma Co., Ltd.. Cell transfection was performed using Lipofectamine® 3000 reagent (Invitrogen; Thermo Fisher Scientific, Inc.) in serum-free DMEM at 37˚C for 6 h, and the culture medium was replaced with complete cell culture DMEM medium for 48 h prior to further analysis. Briefly, 2 µg vectors and 30 nM oligonucleotides were transfected into cells in six-well plate, and 20 ng vectors and 20 nM oligonucleotides were transfected in a 24-well plate. After transfection for 48 h, chondrocytes were treated with 0 or 10 µg/ml LPS at 37˚C for another 48 h.
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6

Overexpression of circ_DYNC1H1 in Hep3B and Huh7 cells

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The pCE-RB-Mam vector and pCE-RB-Mam-circ_DYNC1H1 overexpression vector (circ_DYNC1H1), lentivirus vector (lenti), and lenti-circ_DYNC1H1 vector were bought from Ribobio (Guangzhou, China). miR-520a-3p mimic (miR-520a-3p), miR-520a-3p inhibitor (anti-miR-520a-3p), small interfering RNA of USP14 (si-USP14), and the corresponding negative controls (miR-NC, anti-miR-NC, and si-NC) were acquired from GenePharma (Shanghai, China). Hep3B and Huh7 cells were cultured to 60% monolayer confluence, and cell transfection was carried out by Lipofectamine™ 3000 Reagent (Invitrogen).
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7

Modulating Circular RNA circ_0002060 and miR-198 in Osteosarcoma

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Small interfering RNA (siRNA) against circ_0002060 (si-circ_0002060#1, si-circ_0002060#2 and si-circ_0002060#3), the siRNA control (si-NC), miR-198 mimics (miR-198), the mimics control (miR-NC), circ_0002060 overexpression vector (circ_0002060), the empty vector (pCD-ciR), miR-198 inhibitor (anti-miR-198), the inhibitor control (anti-miR-NC), ABCB1 overexpression vector (ABCB1) and the empty vector (pcDNA) were commercially obtained from GenePharma (Shanghai, China). The vectors and oligonucleotides were transfected into U2OS/DOX and HOS/DOX cells using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA).
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8

Regulation of ADAMTS9 via miR-2682-5p

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MiR-2682-5p mimics (miR-2682-5p) and inhibitor (anti-miR-2682-5p), as well as their scrambles (miR-NC and anti-miR-NC) were purchased from GenePharma (Shanghai, China). Small interfering (siRNA) of ZFAS1 (si-ZFAS1#1 and si-ZFAS#2), and its negative control (si-NC) were designed and synthesized in GenePharma. Besides, the full-length of ADAMTS9 or mutant sequence was cloned into pcDNA3.1 plasmid to form overexpression vector of ADAMTS9 (ADAMTS9) and its control (pcDNA). Then cell transfection was performed by using Lipofectamine 2000 reagent (Invitrogen) following the producer’s instructions.
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9

Modulation of circular RNA OGDH in Cell Lines

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The RNA oligonucleotides used in this study were purchased from GenePharma (Shanghai, China), including small interference (si) RNA against circ-OGDH (si-circ-OGDH#1 and si-circ-OGDH#2) and its matched negative control (si-NC), miR-615-5p mimic (miR-615-5p), negative control matched with miR mimic (miR-NC), miR-615-5p inhibitor (anti-miR-615-5p), and negative control corresponding miR inhibitor (anti-miR-NC). Overexpression plasmids of pCD5-ciR-circ-OGDH (circ-OGDH) and pcDNA-PDX1 (PDX1) were constructed using empty pCD5-ciR (Vector) (Geneseed, Guangzhou, China) and pcDNA (Thermo Fisher Scientific) vectors. Transient transfection was carried out using the Lipofectamine RNAiMAX reagent (Thermo Fisher Scientific, Waltham, MA, USA) or Lipofectamine 3000 reagent (Thermo Fisher Scientific).
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10

Establishing Stable miR-320a Clones

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Plasmid LV3-pGLV-H1-GFP+Puro, with hsa-miR-320a mimics or hsa-miR-320a inhibitor, or their respective control oligonucleotides, namely miR-320a and miR-negative control (NC), and anti-miR-320a and anti-miR-NC, were purchased from GenePharma (Shanghai, China). Lentivirus transfection was performed as per the manufacturer's instructions to establish miR-320a-expressing stable clones (HepG2/miR-320a) and anti-miR-320a-expressing stable clones (HepG2/anti-miR320a) in HepG2 cells. The relative control clones (HepG2/miR-NC and HepG2/anti-miR-NC) were constructed by similar methods.
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