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32 protocols using pure ethanol

1

Synthesis of Hybrid SiO2/PEG/CGA Materials

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The sol-gel method was used to prepare SiO2/PEG/CGA hybrid materials. Tetraethyl orthosilicate (5.6 mL) (TEOS; Si(OC2H5)4; Sigma-Aldrich, St. Louis, MO, USA), used as metal alkoxide precursor, was added in a solution of HNO3 (1.0 mL) (≥65%, Sigma-Aldrich), distilled water (2.2 mL) and pure ethanol (8.8 mL) (99.8% Sigma-Aldrich) to obtain the silica matrix. The microstructural properties of the inorganic matrix are affected by acid pH, as well as the H2O/alkoxide molar ratio [52 (link)].
To the silica sol, a solution of PEG (MW = 400, Sigma-Aldrich) (C = 6 wt%) solubilized in 3.5 mL of ethanol (99.8%, Sigma-Aldrich) was added and the mixture stirred for 15 min. Subsequently, solutions of CGA (95%, Sigma-Aldrich) of different concentrations (C = 5, 10 wt%) dissolved in 3.5 mL of ethanol (99.8%, Sigma-Aldrich) was slowly added to the silica and PEG solution while stirring and kept stirring for 15 min. After 20 min the various gels were air-dried at 40 °C for 24 h to obtain a dry powders and to remove the residual solvent to prevent the thermal degradation of both polymer and drug. In the gels the molar ratios of the reagents are: EtOH/TEOS = 6.2 TEOS/HNO3 = 1.7, H2O/TEOS = 6. A flow chart of the sol-gel procedure used is shown in Figure 9.
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2

Synthesis of Microcrystalline Sodium Chloride

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Sodium chloride crystals were prepared as detailed by Marshall [18] . Briefly, a saturated solution of sodium chloride (Sigma-Aldrich) was prepared and a 5% additional volume of reverse osmosis (RO) water was added. Four 25 mL aliquots of this solution were frozen in dry ice, then broken apart and shaken vigorously in 2 L pure ethanol at − 20 °C (Sigma-Aldrich). Once the frozen salt was completely melted, the precipitate was collected by vacuum filtration, prior to lyophilisation. This product is referred to in this paper as microcrystalline sodium chloride.
For comparison, dry sodium chloride crystals (Sigma-Aldrich) were thoroughly ground in a pestle and mortar.
Sodium chloride crystal face lengths were assessed by analysing light micrographs, obtained using an IX51 microscope (Olympus). Face lengths were measured using Cell^P software (Olympus).
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3

AuNPs Lipid Binding Characterization

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AuNPs (80 nM, 5 ± 0.75 nm, in aqueous solution) came from Ted Pella, Inc. DPPC and PDP PE were purchased from Avanti Polar Lipids, respectively. apoA-I came from Meridian Life Science, Inc. Chloroform and pure ethanol were from Sigma-Aldrich.
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4

Sperm RNA Isolation Protocol

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Sperm RNA was isolated according to a previous study [38 (link)]. Briefly, sperm numbers were adjusted to 40–50 × 106 cells/mL. Sperm pellets were suspended in non-toxic guanidine-isothiocyanate lysis buffer containing β-mercaptoethanol (40 μL/mL; Sigma-Aldrich Co.) and homogenized using a 20G syringe. TRIzol (500 μL) (Invitrogen, Carlsbad, CA, USA) and chloroform (200 μL) were added to the homogenized sample and centrifuged at 12,000 × g for 25 min. After centrifugation, the upper layer (500 μL) was moved to a fresh tube and mixed with pure ethanol (500 μL) (Sigma-Aldrich Co.). Sperm RNA was attached to a spin cartridge and washed with the PureLink RNA Mini Kit (Invitrogen) wash buffer 1 and 2. The isolated RNA was immersed in 20 μL of nuclease-free water (60 °C). The quality (260/280 ratio) and quantity of isolated RNA were measured using an Epoch Microplate Spectrophotometer (BioTek, Winooski, VT, USA).
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5

Inducing Conditional Gene Expression in Flies

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Flies were cultured at 25 °C before RU486 treatment and maintained as described above; at the desired age, flies were switched to vials containing normal diet plus a wet yeast paste mixed with RU486 (M8046, Sigma). A 10 mg/mL stock solution of RU486 (mifepristone; Sigma) was made in pure ethanol (Sigma). For RU486-containing wet yeast preparation, 0.28 mL of RU486 stock solution, 0.1% blue food color additive (to confirm food intake; #861146, Sigma) and 1.52 mL ddH2O were mixed well and then added to 1 g active dry yeast (RED STAR) for a final concentration of 3.6 mM RU486.
For 3TC (2′, 3′-Dideoxy-3′-thiacytidine, #L1295, Sigma) treatment, newly eclosed flies were cultured in plastic vials containing normal diet plus a 3TC-containing wet yeast paste. For 3TC-containing wet yeast preparation, 11.5 mg 3TC, 0.1% blue food color and 3.3 mL ddH2O was mixed well and then added to 1.7 g active dry yeast for a final concentration of 10 mM 3TC. Control flies were fed with the same diet but without RU486 or 3TC. Food was changed daily until flies were dissected.
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6

Screening Novel Plant Essential Oils

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Plant essential oils were obtained from Berje, Inc. (Carteret, NJ, USA). Oils were selected for their novelty compared to what has been screened previously in the literature [6 (link),8 (link),9 (link),11 (link),12 (link),13 (link),14 (link)]. Natural pyrethrins were obtained from Fairfield American Corp. (Newark, NJ, USA). Pure ethanol (100%) was used as a vehicle for plant oils and natural pyrethrins and was obtained from Sigma Aldrich (St. Louis, MO, USA). Piperonyl butoxide (PBO) (>95%) was also obtained from Sigma Aldrich (St. Louis, MO). Sucrose for sugar water was obtained from Domino (Baltimore, MD, USA).
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7

Senescence Induction and Analysis

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After expansion to approximately 70% confluence in 75 cm2 flasks cells were exposed to 3 µM, 13 µM, 24 µM, 40 µM and 65 μM SM or 550 µM H2O2. SM (8 M) was pre-diluted in pure ethanol (Sigma-Aldrich, St. Louis, USA) and finally diluted in FCM (final ethanol content of 0.33%). The H2O2 solution (30% [w/w] in H2O) was once pre-diluted in ultra-pure water followed by dilution in FCM. Solvent controls were treated with FCM containing 0.33% ethanol. FCM was changed three times a week in the flasks. Cells were passaged as required and at about 70% confluence. For qRT-PCR and Western blot experiments, senescent (65 μM SM) and non-senescent cells (solvent control) were used 21 days after exposure.
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8

Aqueous DNA Solution Preparation

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Aqueous DNA solutions were prepared by coating the sides of a glass vial with DNA (Deoxyribonucleic acid sodium salt from salmon sperm, not highly polymerised, MP Biomedicals LLC, molecular weight ~6 × 106), then wetting the DNA with pure ethanol (Sigma-Aldrich, St Louis, MO). The wetted DNA was then agitated in deionised water (DIW, Milli-Q Integral 15, EMD Millipore, Billerica, MA) until homogeneous. Samples with concentrations of 0.5, 1, 2.0, 5.0, and 10.0% DNA by mass in DIW were prepared.
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9

Synthesis of Functionalized Carbon Nanotubes

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Multiwall CNTs were prepared using a chemical vapor deposition (CVD) method on the inner surface of a commercial stainless-steel cylinder used as a reaction chamber in a tubular heat-controlled muffle furnace set at 700 °C (Nabertherm GmbH, Lilienthal, Germany). The tube was 80 cm long and 4 cm in diameter. Then, 80 cm3 of pure ethanol (Sigma Aldrich Co., St Louis, MO, USA) was boiled on a hot plate and a current of nitrogen gas (40 dm3/hour) was used to introduce the ethanol vapor to the reaction chamber at 700 °C. All the ethanol vapor was introduced to the chamber in 20 minutes. The reactor was then allowed to cool under a nitrogen atmosphere. The black soot was scratched from the tube using a plastic brush; it was weighed and preserved as a pristine carbon nanotube. Three grams of this soot were purified and functionalized by boiling the mixture in a 3:1 concentrated hydrochloric and nitric acid for 1 hour. The mixture was cooled and filtered on filter paper using a Buchner apparatus, washed until it reached a neutral pH, and dried at 80 °C in a drying oven for 6 hours. The functionalized soot was collected, ground in a porcelain mortar, and preserved as functionalized carbon nanotubes.
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10

Cellulose Dissolution and Regeneration

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Wood pulp with a degree of polymerization of 450 was provided by Innovia Films Ltd. The ionic liquid 1-ethyl-3-methylimidazolium acetate (EMIMAc) (≥95%), dimethyl sulfoxide (DMSO) (99.9%), pure ethanol, pure acetone and deuterated water (D2O) were purchased from Sigma-Aldrich. Ultra-pure water (H2O) used in the coagulation bath was obtained from a Millipore water system.
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