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Extraction solution

Manufactured by Cell Biolabs
Sourced in United States

Extraction Solution is a reagent designed for the efficient extraction and isolation of target molecules, such as proteins, nucleic acids, or other biomolecules, from biological samples. It provides a simple and effective method for sample preparation prior to further analysis or downstream applications.

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13 protocols using extraction solution

1

Matrigel Invasion Assay for Cells

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Invasion across a basement membrane was performed using BD BioCoat Matrigel Invasion Chambers (BD Biosciences). Briefly, a volume of 0.5 ml cell suspension at a density of 2 x 105 cells/ml in serum-free DMEM was added to invasion chambers, a volume of 750 μl DMEM supplemented with 10% FBS was added to wells that contained invasion chambers. After 16–22 h, invasive cells located on the underside of chambers were stained (cell stain solution, Cell Biolabs), imaged and quantitated by measuring absorbance at 570nm of extracted cell stain following incubation of inserts in 400 μl extraction solution (Cell Biolabs) for 10 min.
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2

Quantifying Cell Adhesion via Fibronectin

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The cells were seeded on 96-well plate coated with Geltrex (Gibco) at a density of 17,500 cells/well. The adhesion to fibronectin was assessed on 48-well fibronectin-coated plate (BD). The cells were seeded at a density of 100,000 cells/well. The cells were incubated for 90 min at 37°C. Next the cells were washed with PBS and adherent cells were stained with Cell Stain Solution (Cell Biolabs, Inc.). The stain was dissolved in Extraction Solution (Cell Biolabs, Inc.) and the absorbance was read with a plate reader (BioTek), λ = 570 nm.
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3

Matrigel Invasion Assay for Cells

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Invasion across a basement membrane was performed using BD BioCoat Matrigel Invasion Chambers (BD Biosciences). Briefly, a volume of 0.5 ml cell suspension at a density of 2 x 105 cells/ml in serum-free DMEM was added to invasion chambers, a volume of 750 μl DMEM supplemented with 10% FBS was added to wells that contained invasion chambers. After 16–22 h, invasive cells located on the underside of chambers were stained (cell stain solution, Cell Biolabs), imaged and quantitated by measuring absorbance at 570nm of extracted cell stain following incubation of inserts in 400 μl extraction solution (Cell Biolabs) for 10 min.
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4

Analyzing NSC Migration via Transwell Assay

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NSC migration was analyzed via a trans-well migration assay using a modified Boyden chamber (CytoSelect™ 24-Well Cell Migration Assay, 8 μM pore size; Cell Biolabs, Inc., San Diego, USA) according to the manufacturer’s protocol. Briefly, NSC were seeded in the inserted upper chamber. To assess the role of CXCR4 in mediating effects of OPN on migration, we blocked the receptor with AMD3100 at a concentration of 10 μM in half of the wells directly after plating for 1 h as pre-incubation before adding OPN. After 1 h, either 10 μg/ml OPN, 10 % fetal calf serum (FCS) as a positive control, or phosphate-buffered saline as a negative control, were added to the lower chambers of the modified Boyden chamber. After 48 h, the non-migrating cells on the upper side of the inserts were removed with a cotton tip. The migrating cells on the lower side of the inserts were stained with Cell Stain Solution for 10 minutes (Cell Biolabs, Inc.). Subsequently, they were washed with phosphate-buffered saline and allowed to air dry, before they were incubated with the Extraction Solution (Cell Biolabs, Inc.). The optical density of each sample was measured at 560 nm in a plate reader (FLUOstar Omega; BMG LABTECH, Ortenberg, Germany). Mean values ± SEM were established among equally treated samples, and results were expressed as percent of the control.
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5

Transwell Assay for Melanoma Cell Migration

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B16F10 murine melanoma cells were obtained from the ATCC and cultured in RPMI-1640 medium supplemented with 10% FBS. Cells were seeded at 2.0 × 105 into an insert well (6.5 mm diameter Transwell with 8 μm pores; Corning, Corning, NY, USA) in 200 μL of RPMI-1640 medium supplemented with 1% FBS. In the bottom chamber, 600 μL of RPMI-1640 medium with 1% FBS with or without test proteins was added. Cells were cultured for 20 h and fixed with 4% paraformaldehyde in PBS for 30 min. Cells attached to the bottom side of the membranes were stained with 0.4% crystal violet in 20% methanol and extracted with 200 μL of Extraction Solution (Cell Biolabs, San Diego, CA, USA). The absorbance at 560 nm was measured with an ARVO MX (PerkinElmer, Akron, OH, USA).
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6

Quantitative Invasion and Migration Assay

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0.3 ml serum free media containing 0.3×105 GIST-T1, GIST430, RMS176 or LMS04 cells were plated for invasion assays in BD BioCoat Matrigel Invasion Chambers (BD Biosciences, Catalog # 354480) and for migration assays in BD BioCoat 8.0 μm PET Membrane 24-well Cell Culture Inserts (BD Biosciences, Catalog # 354578). The wells were fed with 0.5ml RPMI Media 1640 (Invitrogen) containing 15% FBS and incubated in a humidified incubator, at 37°C, 5% CO2 for 144 hours (GIST-T1), 72 hours (GIST430) or 24 hours (RMS176, LMS04, and HT-1080). The media from the inside of the insert was aspirated, and the interiors of the inserts were gently swabbed to remove non-invasive or non-migratory cells. Inserts were transferred to new wells containing 400 μl Cell Stain Solution (Cell Biolabs, Inc) and incubated for 10 minutes at room temperature, then rinsed two times in a beaker of water. Then, the inserts were air dried and transferred to new wells containing 200 μl Extraction Solution (Cell Biolabs, Inc) and quantified at OD 560nm in a microplate reader.
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7

Transwell Migration Assay for NSCs and Microglia

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The cell migration was analyzed via a trans-well migration assay using a modified Boyden chamber (CytoSelect™ 24-Well Cell Migration Assay, 8-μM pore size, Cell Biolabs, Inc., San Diego, USA), following the manufacturer’s protocol. Briefly, freshly collected cells were dissolved in serum-free culture medium within the inserted upper chamber (50,000 NSCs or 10,000 microglia). For microglia experiments, either 10 ng/ml LPS or 50 ng/ml recombinant rat IL4 were added to the upper chambers of the modified Boyden chamber. In NSC experiments, LPS 10 ng/ml, recombinant rat IL4 (50 ng/ml), or conditioned medium (of microglia pre-treated with LPS, IL4, or LPS + IL4) were filled into the lower chamber of the plate. Untreated cells served as a control, and 10% FBS-containing medium in the lower chamber served as a positive control. After 24 h, migrated cells on the lower side of the inserts were stained with crystal violet, extracted (extraction solution, Cell Biolabs, Inc., San Diego, USA), and quantified by photometrical detection (560 nm) in a plate reader (FLUOstar Omega, BMG LABTECH, Ortenberg, Germany). Mean values ± SEM were established among equally treated samples. Each experiment was conducted in triplicate.
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8

Microglia Migration Assay Using Boyden Chamber

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Cell migration was analyzed via a trans-well migration assay using a modified Boyden chamber (CytoSelectTM 24-Well Cell Migration Assay, 8 μM pore size, Cell Biolabs, Inc., San Diego, USA), following the manufacturer’s protocol. Briefly, freshly collected cells (50,000 microglia) were dissolved in a serum-free culture medium within the inserted upper chamber. As a chemo-attractive stimulus, a medium containing 10% FBS was added to the lower chamber. Either 10 μM or 30 μM of ZD7288 or XE-991, respectively, were added to the upper chamber of the modified Boyden chamber. Untreated cells served as a control. After 24 h, migrated cells on the lower side of the inserts were stained with crystal violet, extracted (extraction solution, Cell Biolabs, Inc., San Diego, USA), and quantified by photometrical detection (560 nm) on a plate reader (FLUOstar Omega, BMG LABTECH, Ortenberg, Germany). Mean values +/− SEM were established among equally treated samples. Each experiment was conducted in triplicate.
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9

Quantifying HCC Cell Invasion

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The ability of HCC cell invasion was examined using CytoSelect 24‐well Cell Invasion Assay (CBA‐110; Cell Biolabs). Cells of 1.5 × 105 treated with siRNA (20 nM) were seeded into the upper chamber with Opti‐MEM, and culture medium was applied to the lower chamber. Cells were allowed to invade from the upper chamber toward the lower chamber. The medium was then discarded, Cell Stain Solution (part no. 11002; Cell Biolabs) was added inside the upper chamber, and the stained Cells were observed under microscopy. Extraction solution (part no. 11003; Cell Biolabs) was then added inside the lower chamber. Absorbance was measured with a microplate reader (SH‐9000; Corona Electric) at 560 nm. The experiment was done in triplicate.
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10

Quantitative Invasion and Migration Assay

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0.3 ml serum free media containing 0.3×105 GIST-T1, GIST430, RMS176 or LMS04 cells were plated for invasion assays in BD BioCoat Matrigel Invasion Chambers (BD Biosciences, Catalog # 354480) and for migration assays in BD BioCoat 8.0 μm PET Membrane 24-well Cell Culture Inserts (BD Biosciences, Catalog # 354578). The wells were fed with 0.5ml RPMI Media 1640 (Invitrogen) containing 15% FBS and incubated in a humidified incubator, at 37°C, 5% CO2 for 144 hours (GIST-T1), 72 hours (GIST430) or 24 hours (RMS176, LMS04, and HT-1080). The media from the inside of the insert was aspirated, and the interiors of the inserts were gently swabbed to remove non-invasive or non-migratory cells. Inserts were transferred to new wells containing 400 μl Cell Stain Solution (Cell Biolabs, Inc) and incubated for 10 minutes at room temperature, then rinsed two times in a beaker of water. Then, the inserts were air dried and transferred to new wells containing 200 μl Extraction Solution (Cell Biolabs, Inc) and quantified at OD 560nm in a microplate reader.
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