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4 6 diamino 2 phenylindole dihydrochloride dapi

Manufactured by Thermo Fisher Scientific
Sourced in United States, Spain

4'6-diamino-2-phenylindole dihydrochloride (DAPI) is a fluorescent dye commonly used in biological research. It binds strongly to DNA and emits blue fluorescence when excited by ultraviolet light. DAPI is a useful tool for visualizing and staining cell nuclei.

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7 protocols using 4 6 diamino 2 phenylindole dihydrochloride dapi

1

Fluorescent Imaging of Transfected Cells

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Prior to transfection, cells were seeded overnight onto 18-mm circular coverslips to achieve ~60% confluency. The cells were then transfected with egfp fusion plasmids using FuGENE® HD (Roche Applied Sciences) according to the manufacturer's protocol. After 18 h, the cells were fixed in 0.5 M PIPES buffer, pH 6.8 containing formaldehyde (3.7%) followed by staining with 1 unit of rhodamine-phalloidin (Life Technologies) and 0.35 µM 4,6-diamino-2-phenylindole (DAPI) dihydrochloride (Life Technologies). EGFP-positive cells were imaged using the Zeiss LSM510 META-UV confocal microscope and images were acquired and overlaid using Zeiss LSM Image Browser V4.2 software. For quantification, at least 50 visually rounded cells were counted per coverslip from at least 3 independent transfection experiments.
For transfection of FLAG-mcf-HA plasmids, HEK293T cells were seeded overnight in 6-well dishes followed by transfection with plasmids as described above.
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2

Immunofluorescence Staining of Mitotic Proteins

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The cells were fixed using ice-cold methanol for 6 mins or 4 % formaldehyde for 20 mins as indicated in the figures or figure legends. For Cdt1 spindle microtubule staining, cells were fixed in ice-cold methanol only for 3 mins. Following fixation, the cells were immune-stained with combinations of different primary antibodies, as indicated in the figures or figure legends. The primary antibodies used in the study include Hec1 monoclonal (1:400, ab3613, clone 9G3, Abcam), Zwint1 polyclonal (1:400, A300-781A, Bethyl), Tubulin monoclonal (1:500, T9026, clone DM1A, Sigma), anti-CREST antiserum (1:500, HCT0100, Immunovision, Inc.) and Cdt1 polyclonal (1:50, H300, Santacruz Biotechnologies). The Rabbit polyclonal antibody against Ska3 used at 1:200 dilution was a kind gift from Dr. Gary Gorbsky (Oklahoma Medical Research Foundation, University of Oklahoma). 4,6-diamino-2-phenylindole (DAPI) dihydrochloride (1:10,000, Life Technologies) was used to counterstain the nucleus/chromosomes. Alexa Fluor 488-, Rhodamine Red-X-, or Cy5-labeled donkey secondary antibodies were obtained from Jackson ImmunoResearch Laboratories, Inc. and used at a dilution of 1:200.
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3

Cryosectioning and Immunostaining of Olfactory Tissue

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The fixed brains were cryopreserved in 30% sucrose (wt/vol) in PBS and embedded in optimal cutting temperature compound. The olfactory tissues were cut on a cryostat into 20μm slices and stored at −80°C until use. The slices were pretreated for 30min in 0.025 M HCl at 65°C and rinsed with 0. 1M borate buffer (pH 8.5), PBS and TBS-T (10mM Tris-HCl (pH 7.4), 100 mM NaCl with 0.3% Triton X-100 (vol/vol)). The slices were then blocked with blocking buffer (5% normal donkey serum (vol/vol) in TBS-T) at 20 – 25°C for 1 hour and incubated with primary antibodies diluted in blocking buffer overnight at 4°C. Sections were washed with TBS-T and then incubated with secondary antibodies with 4’6-diamino-2-phenylindole dihydrochloride (DAPI; Thermo Fisher Scientific; Waltham, MA; RRID:AB_2629482) for nucleus staining for 1 hour. The immunoreacted sections were washed and coverslipped with Fluoro-Gel mounting medium (Electron Microscopy Science; Hatfield, PA).
Primary antibodies used in this study are summarized in Table 1. Goat or donkey anti-species IgG conjugated with Alexa 488 or Alexa 555 (Thermo Fisher Scientific; 1:300; RRID:AB_141708, RRID:AB_162543, RRID:AB_141514, RRID:AB_141596, RRID:AB_141709, RRID:AB_142672, RRID:AB_141788) were used as secondary antibodies.
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4

Fluorescent Lipid Vesicle Preparation

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Non-hydrogenated egg phosphatidylcholine (PC), Coatsome® NC-50, (with ≥95% purity) was obtained from NOF Corp (Tokyo, Japan). NaFl and d-limonene were purchased from Sigma-Aldrich Corp (St Louis, MO, USA). Tween® 20 was obtained from Ajax Finechem Pty Ltd (Auckland, New Zealand). Lissamine™ rhodamine B (Rh-PE) and 4′,6-diamino-2-phenylindole dihydrochloride (DAPI) were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Cholesterol (Chol) was obtained from Carlo Erba Reagents (Cornaredo, Italy). All other reagents were of analytical grade.
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5

Cell Imaging of Tyramine and Histamine Effects

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Cells were seeded at a density of 2 x 10 5 cells/well, and incubated in flatbottom microplates under identical conditions to those used in the RTCA studies. After 20 h of incubation the cells were treated with one of six different concentrations of tyramine (0 to 17.3 mM) or histamine (0 to 21.7 mM). At 24 h post-treatment, the cells were washed with 0.1 M PBS pH 7.2, fixed with 3.7% paraformaldehyde for 15 min, permeabilised by immersion in absolute ethanol for 5 min, and then labelled with 4'6-diamino-2-phenylindole dihydrochloride (DAPI) (Thermo Fisher Scientific Inc., Madrid, Spain) by incubation for 5 min with the stain (DAPI 300 nM in 0.1 M PBS pH 7.2). Once the labelling solution was aspirated, the cells were rinsed three times in PBS, and each well of the microplate was viewed using a 3-colour LumaScope-600 epifluorescence microscope (Etaluma Inc., CA, USA).
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6

Neuronal Morphology Visualization in Mouse Brain

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Mice at 6–8 months were anesthetized with 0.3 mg/g Pentobarbital (Mebunat 60 mg/ml) mixed 50:50 with 0.9% NaCl. Mice were perfused transcardially on ice bedding using 10–20 ml 0.9% NaCl followed by 25–50 ml of buffer comprising 4% paraformaldehyde and 0.125% glutaraldehyde in 0.1 M Sorensen’s phosphate buffer (NaH2PO4–Na2HPO4, pH 7.2). The brain was post-fixed in 50 ml 4.0% PFA in phosphate buffer for 4–12 h at +4°C. Coronal sections of 180–200 μm were sectioned using a vibratome. The nuclei were visualized using DAPI (4,6-diamino-2-phenylindole, dihydrochloride (Invitrogen). Pyramidal neurons in the motor cortex and the hippocampus were located according to the Atlas of C57BL/6 mouse brains (Hof et al., 2000 ). Selected neurons were injected by iontophoresis with lucifer yellow dye (Invitrogen) using pulled borosilicate glass tubes (World Precision Instruments). The DC current source was 2–6 nA from a dual micro-iontophoresis current generator, model 260 (World Precision Instruments). After dye loading, brain slices were transferred to a slide and mounted using Shandon PermaFluor mounting medium (ThermoFisher).
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7

Stem Cell Culture and Analysis

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Dulbeco’s modified Eagle’s medium (DMEM) was purchased from Sigma (St. Louis MO), supplemented with 10% FBS (Sigma). Penicillin, streptomycin, L-glutamine and Hepes was from Lonza (Basel, Switzerland). Antibodies to Nanog and β-actin were from Abcam (Cambridge, UK). Mitotracker Green and Mitosox Red were purchased from Molecular Probes, Invitrogen (Carlsbad, CA). TOPRO-3, DAPI (4’,6-diamino-2-phenylindole dihydrochloride) and ProLong Antifade reagent were from Invitrogen. The Violet Ratiometric Membrane Asymmetry Probe/Dead Cell Apoptosis Kit was from Invitrogen and EpiSeeker hydroxymethylated DNA Quantification Kit from Abcam. Kits for molecular studies were purchased from Applied Biosystems, Life Technologies (Paisley, UK). DIO rodent purified HFD (“Diet induced Obesity” with 60% energy from fat, formula 58Y1) was obtained from TestDiet (IPS Product Supplies Ltd, London, UK). Unless otherwise stated, all other reagents were purchased from Sigma-Aldrich.
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