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The TPC-1 is a compact and automated sample preparation system designed for high-throughput processing of biological samples. It features precise liquid handling capabilities and can perform various sample preparation workflows, such as cell lysis, nucleic acid extraction, and library preparation. The TPC-1 is built to provide consistent and reproducible results, enabling efficient sample processing for a wide range of applications.

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57 protocols using tpc 1

1

Papillary Thyroid Cancer Cell Line Experiments

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Papillary thyroid cancer cell lines TPC-1 and BCPAP cells were purchased from the National Infrastructure of Cell Line Resource (Beijing, China). Nthy-ori-3-1 cells was kindly provided by Professor. Yang Yan. TPC-1, BCPAP, and Nthy-ori-3-1 cells were cultured in Roswell Park Memorial Institute (RPMI) 1640 medium (Gibco, Cleveland, TN, USA), with 10% fetal bovine serum (FBS) (Gibco, Cleveland, TN) and 1% penicillin/streptomycin in a 37 °C/5% CO2 incubator. Lipofectamine 2000 (Invitrogen, USA) was used to transfect small interfering RNA into TPC-1 cells. Forty-eight hours after transfection, the cells were collected and analyzed by western blot. The small interfering RNA was synthetized in Sangon Biotech (Shanghai, China). The small interfering RNA sequences were: siNC:UUC UCC GAA CGU GUC ACG UTT; siSGLT2 1#:CGACAAAUACCUGGGAGCAAUTT; si SGLT2 2#:ACCAUGAUUUACACGGUGACATT.
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2

Establishment and Culture of Thyroid Cancer Cell Lines

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The human PTC cell line, BCPAP, the German Collection of Micro-organisms and Cell Cultures (Braunschweig, Germany). The human PTC cell line, TPC1 and normal thyroid cell line Nthy-ori-3-1were obtained from Chinese Science Institute (Shanghai, China), and the human PTC cell line, K1, were purchased from the European Collection of Authenticated Cell Cultures (ECACC, U.K.). The human PTC cell line, IHH4, was obtained from Health Science Research Resources Bank (Osaka, Japan). Cell culture medium was prepared according to the suppliers’ instructions. The BCPAP and Nthy-ori-3-1 were cells were cultured in RPMI 1640 medium (Gibco, Carlsbad, CA, U.S.A.) supplemented with 10% FBS (Gibco, Carlsbad, CA, U.S.A.). The TPC1 and K1 were maintained in DMEM high glucose (Gibco, Carlsbad, CA, U.S.A.) supplemented with 10% FBS. IHH4 was maintained in a mixture (1:1) of RPMI 1640 and DMEM high glucose medium supplemented with 10% FBS. All cells were cultured at 37°C, in a humidified atmosphere with 5% CO2.
The plasmids of pcDNA3.1 (control) and pcDNA3.1-GAS8-AS1, GAS8-AS1 siRNA (si-GAS8-AS1) and scramble, miR-135b-5p mimic and negative control (NC), CCNG siRNA (si-CCNG), and scramble were obtained from GenePharma (Shanghai, China). TPC1 and BCPAP were transfected using Lipofectamine 2000 (Invitrogen) according to the manufacturer’s protocol.
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3

Culturing Thyroid Cell Lines

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The thyroid cancer cell lines BC-PAP, TPC-1, 8505c and FTC133, and the normal thyroid cell line NTHY-ORI3-1 were purchased from Gibco (Thermo, Waltham, MA, USA). The thyroid cancer cell lines BC-PAP, TPC1, and 8505c were cultured with Dulbecco’s modified Eagle’s medium (DMEM) (Thermo, Gibco, MA, USA), and supplemented with 10% fetal bovine serum (FBS) (Thermo, Gibco, MA, USA) and 1% penicillin–streptomycin (Thermo, Gibco, MA, USA). The thyroid cancer cell line FTC133 and normal thyroid cell line NTHY-ORI3-1 were maintained in Roswell Park Memorial Institute (RPMI)-1640 medium containing 10% FBS (Thermo, Gibco, MA, USA) and 1% penicillin–streptomycin (Thermo, Gibco, MA, USA). All cells were cultured at 95% humidity and 5% CO2 at 37 °C.
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4

CENPF Knockdown in Thyroid Cancer Cell Lines

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Human PTHCA cell lines TPC-1 and KTC-1 were purchased from the American Type Culture Collection. TPC-1 and KTC-1 cells were incubated in DMEM supplemented with 10% FBS (Gibco; Thermo Fisher Scientific, Inc.) at 37˚C in a 5% CO2 incubator for 48 h. CENPF shRNA plasmids (1 µg/µl; 5'-GTTTCAGCTTGACAGTCTCG-3') were transfected into TPC-1 and KTC-1 cells using Lipofectamine® 2000 (cat. no. 11668019; Invitrogen, Thermo Fisher Scientific, Inc.) for 6 h. In 6-well plates, 5 µl transfection reagent and 1 µg plasmids were mixed in 250 µl of serum-free DMEM, left to stand for 5 min and then mixed. Following incubation at room temperature for 20 min, the mix was added to serum-starved cells and incubated at 37˚C for 4 h. For the control group, the shRNA targeting sequence was nonsense and did not target intracellular RNAs. Only TPC-1 cells were used in the animal assays, and stable CENPF-depleted cells were used for the in vivo assays. Stable CENPF-depleted TPC-1 cells were screened through CENPF shRNA lentivirus infection to stably deplete CENPF expression and used for in vivo tumor growth assays.
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5

Thyroid Cancer Cell Line Cultures

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The human PTC cell lines (B-CPAP, CTCC-400-0087; TPC-1, CTCC-400-0084), the human thyroid squamous cancer cell line (SW579, CTCC-400-0202), and the human ATC cell line (CAL-62, CTCC-400-0099) were purchased from Meisen (Zhejiang, China) Chinese Tissue Culture Collections. The human ATC cell line (8305C, HTX2750) was purchased from Shenzhen Haodi Huatuo Biotechnology Co., Ltd (Shenzhen, China). The human PTC cell line (K1, IM-H150) was purchased from Xiamen Immocell Biotechnology Co., Ltd (Xiamen, China). The human medullary TC cell line (TT, TCH-C362) was purchased from Suzhou Haixing Biotechnology Co., Ltd (Suzhou, China). Immortalized normal follicular epithelial cell line (Nthy-ori 3-1, BFN680331) was purchased from Qingqi (Shanghai, China) Biotechnology Development Co., Ltd. B-CPAP, TPC1 cells were cultured in RPMI-1640 medium (Gibco) containing 10% fetal bovine serum (HyClone; Thermo Fisher Scientific) and 1% MEMNEAA (Gibco) in 5% CO2 at 37°C. The CAL-62, 8503C, SW579, K1, TT, and Nthy-ori 3-1cell lines were cultured in DMEM (Gibco) containing 10% fetal bovine serum (HyClone; Thermo Fisher Scientific) in 5% CO2 at 37°C.
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6

Authenticated PTC and HEK293T Cell Lines

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Human PTC cell lines TPC-1 (RRID: CVCL_6298), B-CPAP (DSMZ Cat# ACC-273, RRID: CVCL_0153) and human embryonic kidney cell line HEK293T (RRID: CVCL_0063) cell lines were purchased from the Cell Bank of the Chinese Academy of Sciences (CAS). Human PTC cell line K1 (RRID: CVCL_2537) cell line was obtained from Guangzhou Cellcook Biotech Co. All cell lines were authenticated by unique short tandem repeats (STRs) reported in the Leibniz Institute DSMZ. TPC-1 and B-CPAP cells were cultured in RPMI-1640 (RPMI 1640 Medium, Gibco, USA) supplemented with 10% fetal bovine serum (FBS, Gibco), while K1 cells and 293T cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) (High Glucose, Gibco, USA) supplemented with 10% FBS. All of the cell lines were incubated in humidified 37 °C conditions with 5% CO2.
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7

Thyroid Cell Line Cultivation Protocol

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Normal human thyroid follicular epithelial cell line (Nthy-ori-3-1, cat. no. ZQ0874) and human TC cell lines (8305C for ATC, cat. no. ZQ0305 and BCPAP for PTC, cat. no. ZQ0304) were all purchased from Zhong Qiao Xin Zhou Biotechnology Co., Ltd. (Shanghai, China; http://fmgbio.bioon.com.cn). The PTC cell line TPC-1 (cat. no. FH1039) was purchased from Shanghai Fuheng Biotechnology Co., Ltd. (Shanghai, China; www.fudancell.com). Nthy-ori-3-1 cells were cultured in high-glucose DMEM (Sigma) containing 10% FBS (Gibco BRL) and 1% penicillin and streptomycin (PS). 8305C cells were cultured in the DMEM medium that was supplemented with 1% GlutaMAX, 10% FBS, and 1 mL nonessential amino acids (NEAA; 100×). BCPAP cells were cultured in the RPMI medium 1640 (Gibco BRL) that contained 1% PS (Gibco BRL), 10% FBS, 1% NEAA (Invitrogen), and 1% GlutaMAX (Invitrogen). TPC-1 cells were cultured in DMEM medium that contained 10% FBS (Gibco BRL) and 1% penicillin and streptomycin. All kinds of cell lines grew in the humidified atmosphere containing 5% CO2 at 37 °C. Further information, including catalog number, details, and availability of cell lines, is provided in Additional file 1: Table S1.
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8

Thyroid Cancer Cell Line Signaling Pathways

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Reagents included the following: lexatumumab (Human Genome Sciences, GlaxoSmithKline, Philadelphia, PA, USA), LY294002 (Cell Signaling Technology, Danvers, MA, USA) and PLX4720 (Plexxikon, Berkeley, CA, USA). Antibodies – β-actin, phospho-p44/42 MAPK (ERK1/2) (Thr202/Tyr204) (phospho-ERK), p44/42 MAPK (ERK1/2) (Total ERK), total Akt, phospho-Akt (Ser473), caspases 3,8,9, cleaved caspase-3, PARP, c-FLIP, TRAIL-R2, Bcl2, Bcl-xL, Mcl-1, Bim, Bid, Bax, Bad, Bak were purchased from Cell Signaling Technology.
ATC cell lines – 8505c (BRAFV600E/−), SW1736 (BRAFV600E/wt), HTh-7 (NRASQ61R); PTC cell lines – BCPAP (BRAFV600E/wt), TPC-1 (RET/PTC-1); and normal thyroid cell line – HTori were grown in RPMI1640 medium with 10% FBS and Penicillin (100 units/ml)/streptomycin (100 μg/ml) (Gibco, Grand Island, NY, USA).
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9

Culturing Thyroid Cancer Cell Lines

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The human normal thyroid epithelial cell line NTHYORI 3–1, and human papillary thyroid cancer cell line TPC1 were provided by the American Type Culture Collection (ATCC; Manassas, VA, USA). NTHY-ORI 3–1 and TPC-1 cells were cultured in RPMI-1640 containing 10% fetal bovine serum (FBS, Gibco, Carlsbad, CA); SW579 cells were cultured in Leibovitz’s L-15 medium containing 10% FBS; 8505 C cells were cultured in DMEM containing 10% FBS. All cells were cultured in a 5% ­CO2 incubator at 37 °C.
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10

In Vitro Culture of Thyroid Cell Lines

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Human thyroid normal cell line Nthy-ori 3-1 and thyroid cancer cell lines TPC-1 and BHT-101 were obtained from BeNa Culture Collection (Beijing, China). RPMI-1640 medium (Gibco) added with 10% fetal bovine serum (FBS; Gibco) and 10% penicillin (100 units/mL)–streptomycin (100 μg/mL) mixed solution was used for the cultivation of Nthy-ori 3-1 and TPC-1 cells. BHT-101 cells were cultivated with DMEM (Gibco) added with 20% FBS (Gibco), 100 units/mL penicillin and 100 μg/mL streptomycin. Cells were grown in a 37°C, 5% CO2 humidified incubator.
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