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7 protocols using cc 5002

1

Internalized MET Quantification via Trypsin Sensitivity

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The experiment is a modified version of that previously described (15 (link)), intracellular (internalized) MET is protected from exogenous trypsin in cell culture while cell surface-displayed MET is trypsin sensitive (15 (link)). As schematized in Supplementary Fig. 2B, AALE cells were grown to 50% confluence and stimulated with HGF for various time periods. Subsequently, cells were shifted to 4 °C, washed twice with PBS and for 10 minutes in ice-cold pH 3.7 medium (pH adjusted with HCl). After two washes with ice-cold PBS the cells were treated with 0.1% Trypsin in PBS on ice for 30 minutes followed by the addition of TNS (CC-5002, Lonza) and PBS washes. The cells were lysed and handled as described in the immunoblotting section in supplementary method.
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2

RNA Extraction from Infected Cells

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Cells that were harvested at 24 and 72 hours post infections were lysed with SDS lysis buffer (50mM Tris pH8.0, 10mM EDTA, 1% SDS) and collected with a wide-bore pipette tip. Cells that were harvested at 48 hours were first washed by dispensing and aspirating 37°C HEPES buffered saline solution (Lonza, CC-5022), and then trypsinized with 0.025% Trypsin/EDTA (Lonza, CC-5012) for 10 min at 37°C. Dissociated cells were aspirated using a wide-bore pipette tip and to a tube containing ice-cold Trypsin Neutralization Solution (Lonza, CC5002); this was repeated to maximize cell collection. Cells were then pelleted by centrifugation, resuspended in chilled HEPES, and centrifugally pelleted once more before being resuspended in SDS lysis buffer. All samples were physically lysed with QIAshredder homegenizers (Qiagen, 79656) and stored at −80°C. Homogenized SDS lysates were diluted 1:1 with RNA lysis buffer (Agilent) and RNA was extracted using the Absolutely RNA Microprep Kit (Agilent) according to the manufacturer’s protocol, including on-column DNase treatment.
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3

Directed Differentiation of Pluripotent Stem Cells to Endothelial Cells

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Directed differentiation of pluripotent stem cells to endothelial cells was performed according to the published protocol by the Cowan lab, using CHIR09921 (R&D 4423), BMP4 (Peprotech 120-05), forskolin (Abcam ab120058), and VEGF165 (Peprotech 100-20).7 (link) Endothelial cells were maintained in Vasculife VEGF media (Lifeline Cell Technology LL-0003). CD144 positive cells were separated by magnetic associated cell sorting (MACS) using CD144-conjugated magnetic beads (Miltenyi 130-097-857) in LS columns (Miltenyi 130-042-401). Purified iPSC-ECs were plated on fibronectin (Fisher Scientific CB-40008A) coated plates. iPSC-ECs were passaged with 0.025% trypsin and trypsin neutralizing solution (Lonza CC-5012 and CC-5002, respectively).
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4

Trypsin-based Cell Dissociation for TGT Cultures

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Confluent cells growing on a culture dish were washed in HBSS (Gibco; 14170-112) and dissociated with trypsin (Sigma). Residual trypsin was neutralized using a trypsin neutralizing buffer (Lonza; CC-5002) prior to plating cells on the TGT surfaces. Medium on the TGT surfaces was switched to Fluorobrite with or without 50 ng/ml EGF according to experimental conditions. For inhibitor studies, the cells were incubated in Fluorobrite supplemented with the indicated inhibitor for the entire incubation period.
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5

Cell Fixation and Permeabilization Protocol

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Cultured cells were washed by dispensing and aspirating 37°C HEPES buffered saline solution (Lonza, CC-5022), and then dissociated with 0.025% Trypsin/EDTA (Lonza,CC-5012) for 10 min at 37°C. Dissociated cells were aspirated using a wide-bore pipette tip and placed in a tube containing ice-cold Trypsin Neutralization Solution (Lonza, CC5002); this was repeated to maximize cell collection. Cells were then pelleted by centrifugation, resuspended in chilled HEPES, and centrifugally pelleted once more. Using a wide-bore pipette tip, the supernatant was then removed and the cell pellet was resuspended in 100ul chilled 1X DPBS. Next, 1ml of a chilled 1:1 methanol acetone mixture was added to the cells in a dropwise manner with continuous gentle agitation. Cells were incubated on ice for 1 hour, washed in PBS++, counted, and finally resuspended in cold SSC cocktail (3× Lonza AccuGENE SSC, BMA51205 + 0.04% BSA + 1mM DTT + 0.2 U/ul RNase1 inhibitor).
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6

Culturing and Harvesting Human Microvascular Endothelial Cells

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The hMVECs (CC-2543, Lonza) were cultured in endothelial growth medium (EGM, Lonza), according to the manufacturer’s (Lonza) specifications. Briefly, the hMVECs were maintained at 37 °C, in a humidified incubator at 5% CO2/ 95% air until they reached 70–80% confluency (6–8 da after seeding). Only cells at passage numbers 4–7 were used in this work. These confluent hMVECs reproduced the growth-arrested, quiescent state of normal blood vessels in vivo, expressing vascular endothelial (VE)-cadherin at cell–cell junctions. Subsequently, the medium was aspirated, the adherent hMVECs were then washed with 30 mM HEPES-BSS buffer (CC-5024, Lonza) and trypsinized by adding a volume of trypsin-EDTA solution (CC-5012, Lonza) sufficient (2.0 mL) to cover the cell surface in the T25 flask and then incubated at room temperature for 2–4 (5) min. Once they appeared rounded and began to detach, the cells were harvested by sharply rapping the culture flask. The reaction was stopped by adding (4 mL) of trypsin-neutralizing agent (CC-5002, Lonza). The detached cells were transferred to a sterile 15 mL tube and centrifuged at an RCF of 200×g for 5 min to pellet the cells. The supernatant was aspirated and the cell pellet was re-suspended in PBS by pipetting gently no more than 2-3 times.
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7

Isolation and Expansion of hADSCs

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hADSCs (female, 38Y and 44Y, PT5006, lot nos. 0000421627 and 0000692059, respectively; Lonza Walkersville, Inc., Walkersville, MD, USA) were used in this study; 38Y and 44Y indicate the donors’ age in years. The hADSCs were seeded in a 75 cm2 flask with 15 mL of medium prepared from a medium kit (PT-4505 ADSC BulletKit™, Lonza Walkersville, Inc.) and maintained at 37 °C in a humidified 5% CO2 atmosphere. The medium was changed every 3 or 4 days; the cells were passaged at approximately 90% confluency, and passages 3, 4, or 5 (4, 5, or 6 after cell preparation) were used for experiments. Cells were washed with phosphate-buffered saline without calcium and magnesium and trypsinized with trypsin/EDTA solution (CC-5012, Lonza Walkersville, Inc.) for 3-5 min at 37 °C. The trypsin reaction was stopped by addition of trypsin-neutralizing solution (CC-5002, Lonza Walkersville, Inc.), and hADSCs were subsequently detached by pipetting. The supernatant containing hADSCs was transferred to a 50 mL conical tube and centrifuged at 210 × g for 5 min at room temperature. The supernatant was aspirated, and hADSCs were resuspended in LR for use in storage experiments.
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