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Sephadex g 25 pd 10 desalting column

Manufactured by GE Healthcare
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The Sephadex G-25 PD-10 desalting column is a pre-packed disposable column used for the rapid and efficient desalting or buffer exchange of small molecules, peptides, and proteins. The column is packed with Sephadex G-25 resin, which separates molecules based on their size and molecular weight. This column allows for the removal of salts, buffers, or other small molecules from the sample while retaining the desired macromolecules.

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17 protocols using sephadex g 25 pd 10 desalting column

1

Protein Purification Using Affinity Chromatography

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All chemicals were purchased from Sigma Aldrich at analytical grade with the exceptions of HEPES (buffer grade), D‐alanine (Fluka), imidazole (buffer grade), (R)‐ and (S)‐1‐methyl‐3‐phenylpropylamine (ACROS Organics), isopropyl‐ether (stabilized with BHT, TCI), 2‐propanol (Roth), n‐heptane (Fisher Scientific) and anhydrous sodium sulfate (Merck). All solvents used were of analytical grade. Pyruvate and pyridoxal‐5′‐phosphate were also purchased from Sigma Aldrich, as sodium salt and monohydrate form, respectively.
For protein purification procedures syringe filters (0.45 and 0.22 μm) were purchased from Corning, centrifugal filter units (Amicon Ultra‐15, 30 kDa and 50 kDa) from Merck Millipore, Ni‐NTA affinity chromatography pre‐packed cartridges for affinity chromatography (5 ml) from Nordic Biosite and Sephadex G‐25 PD‐10 desalting columns (2.5 ml) from GE‐Healthcare.
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2

Purification of Mutant SnRK2 Proteins

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The SnRK2 box and ABA box mutants were produced by site-directed mutagenesis with specific primers (Supplementary Table S1) using as template the full-length construct of ScSAPK8 in pNIC28-Bsa4. The mutated constructs were confirmed by sequencing and transformed in E. coli BL21(DE3)-R3 cells which express rare tRNAs (plasmid pACYC-LIC+) and the λ-phosphatase.
All proteins were expressed at the same time using the same protocol described previously. After bacterial culture lysis, the clarified supernatants were loaded in 4 ml of Ni2+-sepharose beads (GE Healthcare, Uppsala), washed with binding buffer (4 × 4 ml) and wash buffer (3 × 4 mL). The proteins were eluted with elution buffer (4 × 4 ml), and the imidazole was removed using Sephadex G-25 PD-10 Desalting Columns (GE Healthcare, Uppsala). Protein purity was analyzed by SDS-PAGE gel, and protein masses were confirmed by intact mass spectrometry.
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3

Antibody Expression and Purification

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For antibody expression, the heavy chain (342 bp) and light chain (324 bp) variable domains of the B12 sequence were cloned separately into pFUSEss human IgG1 expression vectors (pFUSEss-CHIg-hG1 and pFUSE2ss-CLIg-hk, Invitrogen) and co-transfected into HEK293T cells. The serum was collected after 72 hours, filtered through a 0.45 μm filter, and purified using a 5 mL HiTrap Protein A HP column (GE Healthcare). The column was equilibrated with 20 mM sodium phosphate at pH 6.8. The serum was loaded onto the column, washed with equilibration buffer for 10 column volumes, and bound protein was eluted with 0.1M citric acid at pH 3.5. Eluted IgG was collected, concentrated using a 50 kDa centrifugal filter (Millipore), and buffer exchanged into PBS using a Sephadex G-25 PD-10 desalting column (GE Healthcare). The purity of the final B12 IgG was analyzed by reduced and nonreduced SDS-PAGE, and protein concentration was measured based on absorbance at 280 nm using a NanoDrop One UV – Vis Spectrophotometer (Thermo-Fisher).
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4

Purification and Characterization of Oxyhaemoglobin

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Human haemoglobin (Sigma Aldrich) was dissolved in water (20 mg/ml) and reduced by a 10-fold molar excess of sodium dithionite (Na2S2O4; Sigma Aldrich). Excess reductant was removed by gel filtration over Sephadex G-25 (PD10 desalting column; GE Healthcare) according to the manufacturer’s instructions. Oxyhaemoglobin (OxyHb) was eluted with 3.5 ml of water, and only the middle run was collected. The concentration of OxyHb was determined spectrophotometrically, as described in.26 Aliquots of the OxyHb stock solution were kept at −80°C, thawed on the day of experimentation and discarded after use.
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5

Adenovirus and Lentivirus Production for KRIT1 Study

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To produce adenovirus containing each of our KRIT1 constructs, HEK293A cells were transfected with parent plasmid pBHGloxΔE1,3Cre and shuttle vector pDC315 containing the gene of interest using TurboFect transfection reagent (Thermo Scientific). Harvested viral particles were desalted using a Sephadex G-25 PD-10 Desalting Column (GE Life Sciences, Marlborough, MA) and collected in 10 mM Tris, pH 8.0, containing 10% glycerol. Viral titers were determined by immunoreactivity ‘spot’ assay, as previously described (Bewig and Schmidt, 2000 (link)), and KRIT1 constructs were transduced into HPAEC at appropriate multiplicities of infection (MOI) to achieve equal expression levels between constructs.
Lentiviral particles were produced by transfecting HEK293T cells with packaging plasmid pMDLg/pRRE, envelope plasmid pMD2.G, transcription factor plasmid pRSV-Rev, and transfer vector pLKO.1 containing either scramble shRNA or KRIT1 shRNA TRCN0000072879, using Lipofectamine 2000 (Invitrogen). Lentiviral particles were precipitated, and then collected in serum-free DMEM/F-12 (1:1). HPAEC were transduced with lentivirus in complete medium containing 8 µg/ml hexadimethrine bromide (Polybrene; Sigma-Aldrich, St Louis, MO).
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6

Fluorescent Labeling of Hyaluronic Acid

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A total of 0.5 mg of HA10 was labeled with three times Alexa Fluor® 488-NHS ester (Life Technologies) dissolved in DMSO under alkaline conditions (pH 9.0) using 1 M sodium bicarbonate. The conjugation reaction was performed for 90 min at room temperature with gentle agitation. Unbound Alexa Fluor® 488 was removed by performing a buffer exchange into D-PBS using a Sephadex G-25 PD-10 desalting column (GE Healthcare). Labeled HA10 was concentrated using a 10 kDa centrifugal filter and the protein concentration and degree of labeling were determined as follows:
proteinconcentration(M)=[A280(A494×0.11)]×dilutionfactormolarextinctioncoefficientofHA10
molesdyepermoleprotein=A494×dilutionfactor71,000×proteinconcentration(M)
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7

Radiolabeling of Anti-CD138 Antibodies

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177Lu-chloride (370 MBq) was added to a solution containing DOTA-9E7.4 mAb, prepared in 0.25M NH4OAc pH 7 and 0.05M ascorbic acid buffer pH 5.5, and was adjusted to pH 5.5 with 0.5M NH4OAc. The reaction mixture was incubated at 42 ± 1°C for 3 h. Complexation was then stopped by adding a 10M excess of EDTA and mixing for 15 min at RT. Labeling of anti-CD138 9E7.4 mAb with 213Bi was performed as described in Chérel et al. (23 (link)). Radioiodination of anti-CD138 antibodies was performed as described in Fraker and Speck (33 (link)). All radiolabeled immunoconjugates were purified by gel filtration on a Sephadex G-25 PD-10 desalting column (GE Healthcare Life Science, France) and eluted in 0.9% NaCl. The radiochemical purity was verified by instant thin layer chromatography (ITLC-SG) as described in Koppe et al. (34 (link)), using citrate buffer (0.1M pH 4.5) as the mobile phase. For all experiments, purities of the 177Lu and 213Bi immunoconjugates were >98%, and purity of the 125I immunoconjugate was >95%. The immunoreactive fraction of the radiolabeled conjugates was determined using CD138-peptide-coated magnetic beads. In all cases, the immunoreactive fraction was estimated at ≥80%.
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8

Antibody-Drug Conjugate Synthesis and Purification

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Antibodies were dialyzed with BupH™ PBS Packs (Thermo Fisher Scientific) and conjugated with smcc-DM1 (MedChemExpress, Monmouth Junction, NJ, USA) at RT at a molar ratio of 1:20 for 1.5 h. The mixture was centrifuged at 21,000× g for 20 min at 20 °C, to remove aggregates. ADCs were purified using Sephadex G-25 PD-10 desalting column (GE Healthcare, Chicago, IL, USA) and stored in 10 mM sodium succinate, 6% (v/v) sucrose, and 0.05% (v/v) Tween-20 pH 5.0. The ADCs were further analyzed using SDS-PAGE and ultraviolet spectrometry. Analysis of the DAR ratio was performed as previously described [32 (link)].
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9

Monoclonal Antibody Production Workflow

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The protocols for biopanning, ELISA screening, scFv expression and purification, as well as affinity/specificity characterization of the isolated scFv clone, HA10, were followed as previously described (32 (link)). The heavy chain (354 bp) and light chain (318 bp) variable domains of the HA10 sequence were cloned separately into pFUSE2ss derived human IgG expression vectors (InvivoGen) and co‐transfected into HEK293T cells according to manufacturer’s guidelines. Following incubation, the serum was collected, filtered through a 0.45 μm filter, and purified using an iTrap Protein A HP column (GE Healthcare). The eluate was collected and concentrated using a 50 kDa centrifugal filter. A final buffer exchange was performed into 1x PBS using a Sephadex G‐25 PD‐10 desalting column (GE Healthcare). The purity of the final HA10 human IgG was analyzed by reduced and non‐reduced SDS‐PAGE and the concentration was measured based on absorbance at 280 nm using a NanoDrop™ One UV‐Vis Spectrophotometer (Thermo Fisher).
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10

Radiolabeling of HuMab-5B1 Antibody

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HuMab-5B1 was produced and provided by MabVax Therapeutics (San Diego, CA) Preparation of Zr-89-labeled HuMab-5B1 ([89Zr]DFO-HuMab-5B1 or MVT-2163) was achieved in accordance with previously described methods, including conjugation of p-SCN-Bn-DFO, purification, and subsequent radiolabeling [13 (link)]. Briefly, Zr-89 oxalate in oxalic acid (1 M) was neutralized to pH 7.0–7.2, using Na2CO3 (1 M) followed by addition of the appropriate construct in PBS (pH 7.4). The mixture was incubated at room temperature (RT) for 30–60 min and monitored using radio-iTLC with silica-gel impregnated glass-microfiber paper strips (iTLC-SG, Varian, Lake Forest, CA, analyzed using an AR-2000, Bioscan Inc., Washington, DC), eluted with a mobile phase of aqueous solution of EDTA (50 mM, pH 5.5). The reaction was quenched by addition of EDTA solution (10–20 μl). Gel-filtration chromatography (Sephadex G-25, PD10 desalting column; GE Healthcare, Chicago, IL) with 0.9 % saline was used to purify radiolabeled construct, and radiochemical purity was determined by radio-iTLC as described above. Zr-89 was obtained from and produced by MSKCC via the 89Y(p,n)89Zr transmutation reaction using a TR19/9 variable-beam energy cyclotron (Ebco Industries, Richmond, British Columbia, Canada) [14 (link)].
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