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6 protocols using rabbit anti pkcζ

1

Immunohistochemical Staining of Drosophila Neuroblasts

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Brains and egg chambers were fixed for 20 min in 4% formaldehyde (Sigma-Aldrich) in PBS. Primary antibodies were incubated in PBST (PBS containing 0.1% Triton X-100) overnight. Primary antibodies used were as follows: rabbit anti-PKCζ (Santa Cruz, sc-17781, 1:1000), guinea pig anti-Numb (1:1000, provided by J. Skeath, Department of Genetics, Washington University in St. Louis, USA; O'Connor-Giles and Skeath, 2003 (link)), rabbit anti-Miranda (1:1000, provided by C. Gonzalez, Institute for Research in Biomedicine, Barcelona, Spain; Mollinari et al., 2002 (link)), rabbit anti P-S980-Bazooka,(1:1000, provided by A. Wodarz; Krahn et al., 2009 (link)), guinea pig anti-Par6 (1:500, provided A. Wodarz; Kim et al., 2009 (link)), mouse anti-Dlg (Developmental Studies Hybridoma Bank, 4F1, 1:500). Secondary antibodies used were (Life Technologies, all used at 1:2000): goat anti-rabbit Alexa 488 (A11034), goat anti-guinea pig Alexa 647 (A21450), goat anti-mouse Alexa 647 (A21325), goat anti-mouse Alexa 488 (A11029), donkey anti-rabbit Alexa 594 (A21207). Images were taken using a Leica-SP8 confocal microscope with a 63× water objective (NA 1.2).
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2

Fluorescent Imaging of Drosophila Larval Brains

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To analyze the UAS-RNAi lines of the screen, late L3 larval brains were dissected, mounted without fixation, and analyzed under a Carl Zeiss microscope (Axio Imager.A1), EC Plan-Neofluar 20× objective (Figure 4, Figure 5 and Figure 6a) and an AxioCam Hrc Carl Zeiss camera. Images were assembled using Adobe Photoshop CS6.
To perform the immunofluorescence, L3 larval brains were dissected in PBS and fixed with 4% PFA in PBT (PBS and Triton X-100 0.1%) for 20 min at room temperature with gentle rocking. Fixed brains were washed 3 times for 15 min with PBT (PBS and Triton X-100 0.3%) and then incubated in PBT-BSA for at least 1h before incubation with the corresponding primary antibody/antibodies. The following primary antibodies were used in this study: guinea pig anti-Dpn (1:2,000; [42 (link)]), rabbit anti-Ase (1:100; [42 (link)]), goat anti-Numb (1:200; Santa Cruz Biotechnology, sc-23579), and rabbit anti-PKCζ (1:100; Santa Cruz Biotechnology, sc-216). Fluorescence images corresponding to Figure 1 and Figure 2a,b were recorded using an Inverted Leica laser-scanning spectral confocal microscope TCS SP2. Fluorescence images in Figure 2c and Figure 6b were recorded using a Super-resolution Inverted Confocal Microscope Zeiss LSM 880-Airyscan Elyra PS.1 (Figure 2c) or an Inverted Confocal Microscope Olympus FV1200 (Figure 6b), respectively.
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3

Ovary Dissection and Immunostaining Protocol

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Ovary dissection was carried out in phosphate-buffered saline (PBS) and then fixed in Devitellinizing buffer (7% formaldehyde) and heptane (Sigma) mixture (1:6) for 10min. After washes in PBS, ovaries were incubated in blocking solution (PBT, 10% goat serum) for 30min and then stained overnight at 4°C. Primary antibodies and their concentrations were as follows: mouse anti-Arm (1:50; N27A1; Developmental Studies Hybridoma Bank (DSHB)), rabbit anti-PKCζ (1:200; C-20; Santa Cruz), mouse anti-Dlg (1:50; 4F3; DSHB), mouse anti-Crb (1:10; Cq4; DSHB), rat anti-Ncad (1:20; DN-Ex #8; DSHB). Methanol treatment was used after fixation for anti-Crb staining. After washes in PBT, ovaries were incubated with secondary antibodies (1:250, Jackson ImmunoResearch) for 2 hours at room temperature. F-actin was labeled by Rhodamine phalloidin (1:150, Sigma). DAPI (0.05 mg/mL, Sigma) was used to stain nuclei. Confocal images were obtained using a Leica TCS SP5 II with a HyD detector or an Olympus FV1000 confocal microscope with a GaAsP detector. High resolution confocal images were obtained using a Zeiss LSM 880 with Airyscan super-resolution mode. Three-dimensional confocal reconstruction were performed by Imaris software (Bitplane).
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4

Detailed Immunofluorescent Staining Protocol

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Immunofluorescent staining was performed as previously described (Frankenberg et al., 2013 (link)). Details of antibodies used are provided in the Supplementary Experimental Procedures. The following primary antibodies were used: goat anti-SOX2 (R&D Systems) at a dilution of 1/50; mouse anti-OCT4 (Santa Cruz), goat anti-GATA4 (Santa Cruz), goat anti-GATA6 (R&D Systems) and goat anti-SOX17 (R&D Systems) at 1/100; rabbit anti-PKCζ (Santa Cruz), mouse anti-DAB2 (BD Transduction Laboratories) at 1/300 and mouse anti-CDX2 (BioGenex) at 1/200; rabbit anti-NANOG (CosmoBio), Mouse anti-GATA3 (Biolegend) and rabbit anti-EOMES (Abcam) at 1/500. Secondary Alexa Fluor-conjugated antibodies (Invitrogen) were used at a dilution of 1/500. DNA was visualized using 5 μg/ml Hoechst 33342 (Invitrogen) in PBS.
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5

Immunofluorescence Microscopy Reagents

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Cell culture reagents were purchased from Mediatech (Manassas, VA). General chemicals were purchased from Sigma-Aldrich (St. Louis, MO). The following primary antibodies were used: mouse anti-podocalyxin was a gift from Dr. Karl Matlin (University of Chicago); rabbit anti-PKCζ (Santa Cruz Biotechnology, Dallas, TX); mouse anti-tubulin, mouse anti-β-actin, rhodamine-phalloidin, rat anti-E-cadherin (Sigma), chicken anti-GFP (Life Technologies, Grand Island, NY); rabbit anti-NHERF1 (Abcam, Cambridge, MA); rabbit anti-Par3 (EMD Millipore, Billerica, MA); rabbit anti-cingulin was a gift from Dr. Rytis Prekeris (University of Colorado, Denver). Secondary antibodies were purchased from Molecular Probes/Thermo-Fisher (Eugene, OR). GFP-Cdc42 and GFP-Cdc42Q61L were purchased from Addgene (Cambridge, MA). GFP-PH-PLCδ, GFP-PH-Akt, and Annexin2-GFP plasmids were gifts from Dr. Keith Mostov (University of California, San Francisco). Arf6-GFP and PtdIns(4)P 5 K plasmids were described previously85 86 (link). GFP-Rab11a, GFP-Rab14, and GFP-Rab14S25N were prepared as described48 . Matrigel was purchased from Corning Life Sciences (Corning, NY).
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6

Immunostaining of Zebrafish Hearts

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Hearts from 120-hpf zebrafish embryos were dissected in Tyrode's solution [136 mM NaCl, 5.4 mM KCl, 1 mM MgCl2 × 6H2O, 5 mM D(+) glucose, 10 mM HEPES, 0.3 mM Na2HPO4 × 2H2O, 1.8 mM CaCl2 × 2H2O at pH 7.4] with 20 mg/mL BSA and fixed with Shandon Glyo-Fixx (Thermo Fisher Scientific, 9990920) for 20 min at room temperature. Hearts were blocked in blocking buffer containing 5% normal goat serum, 20 mg/mL BSA, 1% DMSO, and 0.1% Tween-20 in PBS followed by overnight incubation at 4°C with primary antibodies diluted in blocking buffer. Primary antibodies used were mouse anti-MHC (1:50; Developmental Studies Hybridoma Bank, MF20 supernatant) and rabbit anti-PKC-ζ (1:100; Santa Cruz Biotechnology, sc-216). Hearts were washed three times in blocking buffer, incubated with Alexa-conjugated secondary antibodies for 4 h and DAPI in PBS for 20 min at room temperature, washed again three times with blocking buffer, and mounted in the ProLong Gold anti-fade reagent (Thermo Fisher Scientific, P36934).
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