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5 protocols using nu7026

1

Inhibitors of DNA Damage Repair

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DNA damage repair inhibitors were dissolved in DMSO and used at the following concentrations: 15 μM ABT-888 (PARP inhibitor, Enzo), 10 μM Olaparib (PARP inhibitor, ApexBio), and 10 μM NU7026 (DNA-PKcs inhibitor, Abcam). Methotrexate (454126, Calbiochem) was dissolved in DMSO and used at indicated concentrations. Doxorubicin (Sigma) was dissolved in water and cells were treated at a final concentration of 0.5 μM for 1 hour. Hydroxyurea (Sigma) was dissolved in PBS and used at a final concentration of 100 μM. S-Trityl-L-cysteine (STLC, Sigma) was used at a final concentration of 10μM, and zeocin (Gibco) was used at a final concentration of 100μg/ml.
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2

Comprehensive Cell Line Verification and MAPKi Resistance Assays

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All cell lines were routinely tested for Mycoplasma and profiled and identified by RNA-seq and the GenePrint 10 system (Promega) at periodic intervals during the course of this study. All M series cell lines were established from patient-derived tumors at the UCLA with institutional review board approval. All M cell lines with acquired MAPKi resistance were derived in the Lo Laboratory and published previously (3, 5, 8, 9, 11, 22, 40, 67 (link)). We maintained H358 (ATCC) in RPMI 1640 (Gibco) with 10% heat-inactivated FBS (Omega Scientific, FB-02) and 2 mmol/L glutamine in a humidified, 5% CO2 incubator at 37°C; all other cell lines were maintained in high-glucose DMEM (Omega Scientific, DM-22) with 10% heat-inactivated FBS (Omega Scientific, FB-02) and 2 mmol/L glutamine in a humidified, 5% CO2 incubator at 37°C. We obtained inhibitors from the following sources: PLX4032 (Plexxikon), AZD6244 (Selleck Chemicals), trametinib (LC Laboratories), NU7026 (Abcam, ab120970), ABT888 (Enzo, ALX-270-444-M005), VX984 (MCE, HY-19939S), AZD7648 (TargetMol, T7122), olaparib (LC Laboratories, 763113-22–0), MRTX849 (Selleckchem, S8884), AMG510 (Selleckchem, S8830), and BGB-283 (BeiGene, via a Material Transfer Agreement with UCLA). All inhibitors were dissolved in DMSO and stored at −20°C.
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3

Cell Viability Assay for NU7026 and CGK733

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MRC-5 and A549 cells were plated into 96-well dishes at a density of 5×104 cells/well. NU7026 and CGK733 (Abcam, Cambridge, UK) were added to each well at a final concentration of 5–50 µM, and incubated for 48 h. Thereafter, MTT (final concentration, 5 mg/ml) was added to each well. The medium was then removed, and the formazan crystals were dissolved by adding 150 µl dimethyl sulfoxide. The absorbance at 490 nm was subsequently measured in a microplate reader (Infinite M200; Tecan Group Ltd., Männedorf, Switzerland) (16 (link),17 (link)).
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4

Sensitizing A549 Cells to X-ray Irradiation

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DNA-PK inhibitor NU7026 (Abcam, Cambridge, UK) was dissolved in DMSO. 1–10×106 A549 cells were treated with 10 µM NU7026 for 30 min, prior to being exposed to 4 Gy X-rays for 3.6 min at room temperature. NU7026 was not washed until the sample was collected. All the treatments with NU7026 were performed in the same manner. X-rays were obtained from a Faxition 43885D X-ray machine at 100 kVp energy. The X-ray dose was 1.1 Gy/min. Non-irradiated A549 cells were handled in parallel with the irradiated cells.
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5

Inhibitors of DNA Damage Repair

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DNA damage repair inhibitors were dissolved in DMSO and used at the following concentrations: 15 μM ABT-888 (PARP inhibitor, Enzo), 10 μM Olaparib (PARP inhibitor, ApexBio), and 10 μM NU7026 (DNA-PKcs inhibitor, Abcam). Methotrexate (454126, Calbiochem) was dissolved in DMSO and used at indicated concentrations. Doxorubicin (Sigma) was dissolved in water and cells were treated at a final concentration of 0.5 μM for 1 hour. Hydroxyurea (Sigma) was dissolved in PBS and used at a final concentration of 100 μM. S-Trityl-L-cysteine (STLC, Sigma) was used at a final concentration of 10μM, and zeocin (Gibco) was used at a final concentration of 100μg/ml.
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