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22 protocols using anti f actin

1

Protein Expression Analysis in Testis

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Equal quantities of protein from the testis tissue lysate were processed for Western blotting, and each sample was denatured, electrophoresed, and transferred onto a polyvinylidenedifluoride membrane. The membrane was blocked with 5% bovine serum albumin and immunolabeled with Anti-p38 (abcam), Anti-F-actin (abcam), and Anti-Occludin (abcam) antibodies, followed by incubation with HRP-labeled anti-rabbit IgG antibody and Clarity Western ECL Substrate. Blots were then stripped with 50 mM glycine and reprobed with HRP-labeled Anti-p38 (abcam), Anti-F-actin (abcam), and Anti-Occludin (abcam) antibodies. The western blotting results include representative images of the blots adjusted according to the contrast and density of each band normalized to p38, F-actin, and Occludin.
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2

Immunofluorescence Staining of Piezo1 and Cell Markers

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Cell samples were fixed in 4% paraformaldehyde in PBS for 15 min at room temperature. Tissue samples were fixed in 4% paraformaldehyde in PBS overnight at room temperature. The tissue samples were embedded, frozen, and sliced. Both the cell and tissue samples were then washed, permeabilized, and blocked. We used the following antibodies to investigate protein expression in these samples: anti-Piezo1 (Abcam, ab128245, 1:100), anti-Ki67 (CST, #9449, 1:400), anti-F-actin (Abcam, ab130935, 1:500), anti-α-SMA (CST, #48938, 1:200), Alexa Fluor 594 goat anti-rabbit secondary antibody (Jackson lab, 125369, 1:200), and Alexa Fluor 488 goat anti-mouse secondary antibody (Jackson lab, 133384, 1:200). Images were captured using a confocal microscope (Zeiss, Germany) or a Nikon Eclipse E800 microscope (Nikon, Melville, NY, USA).
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3

Western Blot Analysis of EMT Markers

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SW480 and HCT116 cells were seeded in 6-well plates until they grew with adherence, the various conditioned media was replaced as described previously and incubated for 24 hours, and cell extracts were prepared in ice-cold lysis buffer containing protease inhibitor. The cell proteins were separated by SDS-PAGE and blotted onto polyvinylidene difluoride (PVEF) membranes (Millipore). Membranes were further incubated sequentially with specific antibodies including anti-E-cadherin (1:1000, Pro780, Cell Signaling Technology), anti-N-cadherin (1:1000, EPR1791–4, Epitomics), anti-Vimentin (1:1000, EPR3776, Epitomics), anti-MIF (1:1000, Santa Cruz Biotechnology), anti-p-Cofilin (1:1000, 77G2, Cell Signaling Technology), and anti-F-actin (5 μg/ml, 4E3.adl, Abcam). After primary antibodies were incubated, the blots were subsequently incubated with appropriate secondary antibodies. Protein bands were visualized with ECL reagent (Thermo Scientific Inc.) and a Bio-Rad image acquisition system (Bio-Rad Laboratories). The protein bands was quantified using densitometric scanning software, and relative protein abundance was determined by normalization with tubulin or GAPDH.
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4

Protein Expression Analysis of Ischemic Cortex

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The tissues corresponding to the peri-ischemic cortex were taken out and then homogenized in the RIPA lysis buffer containing 1 mM PMSF. After centrifuging at 12,000 rpm for 10 min at 4°C, a bicinchoninic acid (BCA) protein assay kit (Bi yuntian Biotech. Co., Ltd., China) was used to determine the protein concentration of the supernatant. The supernatant was diluted by loading buffer to 1 μg/μL and then heated at 100°C for 5 min. Proteins (20 μg/well) were separated by SDA-PAGE and transferred to a PVDF membrane. The membranes were blocked for 2 h at room temperature in TBST containing 5% BSA, and then, it was incubated with specific primary antibodies overnight at 4°C: anti-bax, anti-bcl-2, anti-caspase 3, anti-ROCK1, anti-MLC, anti-p-MLC, anti-F-actin and anti-NMMHC IIA (diluted at 1:1000, Abcam, UK). After the membrane was washed with TBST, it was incubated for 2 h with a secondary antibody (goat anti-rabbit 1:10,000 Biomorld Technology, USA). Images were detected with ECL and imaged using the Gel Imaging System (BioRad, Hercules, CA, USA). Each experiment was performed with three independent replicates.
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5

Visualizing F-Actin in RAW264.7 Cells

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RAW264.7 cells were seeded onto six-well culture plates (2 × 106 cells/well) and cultured for 24 h. RAW264.7 cells were fixed with 4% PFA in PBS for 10 min. The cells were permeabilized with 0.1% Triton-X 100 in PBS for 5 min and incubated with rhodamine-conjugated phalloidin (Biotium, Fremont, CA, USA) to visualize F-actin. All the experiments were carried out three times. Anti-F-actin that marked with FITC was purchased from Abcam and diluted to 1:600.
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6

Corneal Flat Mount Immunofluorescence Imaging

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Full-thickness corneal flat mounts were fixed in 4% paraformaldehyde and blocked with 5% normal serum for 30 min at room temperature. The samples were treated with primary antibodies overnight at 4°C and subsequently with secondary antibodies for 1 h at 37°C. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI). The flat mounts were examined and captured under confocal microscopy (LSM800, Zeiss, Germany). The antibodies used for immunofluorescence staining were anti-ZO-1 (1:100, Invitrogen, 40–2200), anti-F-actin (1:100, Abcam, ab176757), anti-IL-11 (1:100, Immumoway, YT2309), and anti-ITGA6 (1:100, Thermo Fisher, 710209), while Alexa Fluor 594-conjugated and 488-conjugated secondary antibodies were obtained from Life Technologies.
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7

ANLN Expression in BLCA Tissues

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Formalin-fixed paraffin-embedded BLCA samples were cut into 5-μm-thick sections. Antigen retrieval and immunostaining of sections were performed as described previously37 (link). Primary antibody (1:100) anti-ANLN was purchased from Abcam (ab154337). Staining intensity was classified in a blinded fashion by pathologists. The immunohistochemical stain was scored on the percentage of positively tumor cell nucleus (negative, score 0; <1/3, score 1; 1/3–2/3, score 2; >2/3, score 3) and the color intensity of cytoplasm (negative, score 0; stramineous, score 1; buffy, score 2; dark brown, score 3). The two scores were combined, scores of 0–3 were defined as low expression, and 4–6 were defined as high expression. Immunofluorescence was performed using a standard protocol as described previously23 (link). Primary antibodies were as follows: anti-ANLN (1:100), anti-F-actin (1:100, Abcam, ab130935). Images of immunofluorescence were taken by confocal microscope (Leica).
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8

Reagents and Antibodies for Cell Signaling Analysis

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Dimethyl sulfoxide (DMSO), bicinchoninic acid (BCA), trichloroacetic acid (TCA), sulforhodamine B (SRB), and catalase were purchased from Sigma-Aldrich, Inc. (St. Louis, MO, USA), Roswell Park Memorial Institute (RPMI) 1640 medium, fetal bovine serum (FBS), trypsin-EDTA solution (1X), antibiotic-antimycotic solution (100X) and phosphate-buffered saline (PBS) (1X) were purchased from HyClone Laboratories, Inc. (South Logan, UT, USA). Anti-p-AMPKα, anti-AMPKα, anti-p-ACC, anti-ACC, anti-p-mTOR, anti-mTOR, anti-p-4EBP1, anti-4EBP1, anti-p-eIF4E, anti-eIF4E, anti-p-P70S6K1, anti-P70S6K1, anti-p-RPS6, anti-RPS6, anti-rictor, anti-p-Akt, anti-Akt, and anti-E-cadherin were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-PKC-α, anti-p-Rac1, anti-Rac1, anti-PCNA, anti-β-actin, and all secondary antibodies were purchased from Santa Cruz Biotechnology. (Santa Cruz, CA, USA). Anti-p-rictor was purchased from Millipore (Temecula, CA, USA). Anti-p-PKC-α, anti-F-actin, and anti-Ki-67 were purchased from Abcam (Cambridge, MA, USA). Gefitinib was purchased from Selleckchem (Houston, TX, USA) and rapamycin was purchased from Tocris Bioscience (Bristol, UK).
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9

Protein Expression Analysis in Tissue Samples

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Tissues or cells were collected and lysed in radioimmunoprecipitation assay (RIPA, Solarbio, R0020) buffer and phenylmethylsulfonyl fluoride (PMSF, Solarbio, P0100) (RIPA buffer: PMSF = 100:1). The protein concentration was measured by bicinchoninic acid protein assay kit (Coolaber, SK1070). After separated in sodium dodecyl sulfate polyacrylamide gel electrophoresis, the protein was transferred to polyvinylidenefluoride membranes. The protein was sealed for 2 h with 5% skim milk and incubated overnight at 4°C with antibodies: anti-collagen I (Affinity, AF7001), anti-collagen III (Affinity, AF0136), anti-vimentin (Affinity, AF7013), anti-α-SMA (Affinity, AF1032), anti-FAP1 (Cell Signaling Technology, 66562S), anti-S100A4 (Cell Signaling Technology, 13018S), anti-Myo1c (Abcam, ab194828), anti-YAP1 (Cell Signaling Technology, 14074S), anti-phospho-YAP1 (Cell Signaling Technology, 53749S), anti-F-actin (Abcam, ab130935), anti-GAPDH (Affinity, AF7021). 1×Tris buffered saline Tween was used to wash the membranes for three times. Then membranes were incubated for 1 h with secondary antibodies at room temperature. The expression of proteins was detected by enhanced chemiluminescence reagent kit (SparkJade, ED0015-B).
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10

TGF-β1 Signaling Pathway Modulation

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Transforming growth factor-β1 (cat #: T1654), UA (cat #: 03240595), and protein A agarose (cat #: P1406) were purchased from Sigma–Aldrich (St. Louis, MO, United States). Matrigel (cat #: 354263) was purchased from Corning Incorporated (New York, NY, United States). Puromycin (cat #: REVG1001) was purchased from GENECHEM (Shanghai, China). The anti-NOX4 (cat #: ab109225), anti-RhoA (cat #: ab187027), anti-ROCK1 (cat #: ab205829), anti-α-SMA (cat #: ab32575), anti-Collagen-I (cat #: ab6308), anti-p67phox (cat #: ab109366), anti-Rac1 (cat #: ab33186), anti-TIMP1 (cat #: ab61224), anti-MMP1 (cat #: ab137332), anti-MMP2 (cat #: ab37150), anti-MMP9 (cat #: 119906), and anti-F-actin (cat #: ab205) antibodies were purchased from Abcam (Cambridge, MA, United States). The anti-GAPDH antibody was purchased from OriGene (cat #: TA802519) (Rockville, MD, United States). The full-length human recombinant NOX4 (cat #: H00050507-G01) and RhoA (cat #: H00000387-P01) proteins were purchased from Abnova (Walnut, CA, United States).
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