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3 protocols using β actin

1

Quantifying Colon Protein Expression

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Colon (proximal) samples were homogenized in mammalian protein extraction reagent (MPER; ThermoFisher Scientific) and centrifuged at 10,000 g for 20 min at 4°C. Expression of candidate proteins in the supernatant were analyzed using western immunoblotting following separation of proteins by SDS-PAGE on a 6 or 12 % gel under denaturing conditions. The membranes were incubated in primary antibody to the following proteins: 15-Pgdh (1:1000, Abcam), Cox-2 (1:500, Abcam), or Zo-1 (1:500, Proteintech) overnight at 4°C. Expression of β-actin (1:20,000; Fitzgerald) or Vinculin (1:5,000; Cell Proteintech) were used as loading controls. The blots were incubated with appropriate HRP-conjugated secondary antibody for 1 hour at room teMPERature and were developed and imaged with West Pico chemiluminescence reagent (ThermoFisher Scientific) and G:BOX Chemi XX6 (Syngene), respectively. Densitometric evaluation of the bands was performed using Image J software (National Institutes of Health).
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2

Redox Signaling Pathway Antibody Analysis

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Antibodies to phospho-p65 (ser536) (3033), total p65 (8242), Trx1
(2429), Trx2 (14907), HO-1 (5061), NQO1 (62262), TXNIP (c14715), SIRT6 (12486),
TBP (8515), Histone 3 (9715) and β-tubulin (2146) were purchased from
Cell Signaling Technology. Antibodies purchased from Abcam were to Prx1
(ab109506), Prx2 (ab109367, Prx3 (ab73349), Prx4 (ab59542), Prx6 (ab73350),
PrxSO2/3 (ab16830), Nrf2 (ab62352), and β-actin (ab8226).
The antibody to LDH was purchased from Fitzgerald (20-LR22) and the antibody to
H3K9ac was from Millipore (06-942). The antibody to Srx was a kind gift from Dr.
Sue Gho Rhee (Yonsei University, Seoul, South Korea). The TXNIP antibody used
for IHC was from Proteintech (18243-1-AP). The antibody to AhpC was purified
from rabbit serum (33 (link)). Salmonella
typhimurium AhpC C165S protein was purified and expressed as previously
described (Poole et al, 1996) and AhpC C165S was reduced and labeled with biotin
maleimide as described (33 (link)). DCP-Bio1 was
purchased from Kerafast. Menadione, H2O2, EX-527,
N-ethylmaleimide (NEM), D-alanine, Flavin adenine dinucleotide disodium salt
hydrate (FAD), iodoacetamide (IAM), and catalase were purchased from Sigma
Aldrich. Dithiothreitol (DTT) was purchased from Life Technologies/Thermo Fisher
Scientific. Endotoxin-free recombinant fibronectin fragment (FN-f) was expressed
and purified as described (29 (link)).
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3

Western Blot Analysis of Protein Expression

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Western blot assays were performed to measure the expression of target proteins. Total cellular proteins were extracted from the cultured cells using lysis buffer [20 mM Tris (pH7.4), 150 mM NaCl, 5 mM EDTA, 50 mM NaF and 0.1% NP-40]. Proteins were separated by SDS-PAGE (10%, w/v) and transferred onto PVDF membranes, which were then blocked using 5% skim milk for 2 h at room temperature. The membranes were subsequently incubated with target primary antibodies against the following: MMP-9 [13667S; Cell Signaling Technology (CST), Danvers, MA, USA], vimentin (10R-1903; Fitzgerald Industries International, Acton, MA, USA), α-smooth muscle actin (α-SMA; 19245; CST), TGFBR1 (70R-36484) and β-actin (10R-10263) (both from Fitzgerald Industries International) at 4°C overnight. The dilution used for MMP-9, vimentin, α-SMA and TGFBR1 was 1:100, and the dilution used for β-actin was 1:1,000. Following incubation with horseradish peroxidase-labeled secondary antibodies (A0216; Byotime, Shanghai, China) which were diluted at 1:1,000 at 37°C for 2 h, the protein bands were visualized using a chemiluminescence (ECL) detection system and images were captured.
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