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4 protocols using anti cd8α

1

Immunohistochemical Analysis of Tumor Microenvironment

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The tumors were collected, frozen in liquid nitrogen, and sectioned into 5 μm slices. Macrophages in the tumor sections were stained with anti-F4/80 and anti-CD206 antibodies (Abcam, Cambridge, UK), followed by appropriate fluorochrome-conjugated (Alexa Fluor 594 (Abcam) and FITC (Vector Laboratories, Burlingame, CA, USA) secondary antibodies. The cytotoxic T lymphocytes were stained with anti-CD8α (Abcam) and subsequently with Alexa Fluor 594-conjugated secondary antibodies (Abcam). For the immunohistochemical analyses of pericytes coverage, tumor blood vessels sections were incubated with anti-α-Smooth Muscle Actin and anti-CD31 antibodies (Abcam) and subsequently with Texas Red and FITC-conjugated secondary antibodies (Vector Laboratories) [13 (link)]. All the sections were mounted in VECTASHIELD Mounting Medium with DAPI (Vector Laboratories). Microscopic observations were performed using a LSM710 confocal microscope (Carl Zeiss Microscopy GmbH). The obtained confocal images were analyzed with ImageJ 1.48v (National Institutes of Health and the Laboratory for Optical and Computational Instrumentation, LOCI, University of Wisconsin, USA) and the results were expressed as the percentage of area [%].
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2

Immunohistochemical Analysis of Tumor Microenvironment

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Tumor tissues and organs were fixed with formalin, embedded in paraffin, and sectioned at a 5-mm thickness. The organs were stained with hematoxylin and eosin. The tumor tissue sections were examined by IHC staining by anti-α-SMA (CST), anti-CD4 (Abcam) and anti-CD8α (Abcam). Briefly, the sections were exposed to 3% H2O2 in methanol after deparaffinization and rehydration and then blocked with 1% BSA for 30 min at room temperature. After blocking, the sections were incubated with primary antibody overnight at 4 °C, followed by peroxidase-conjugated secondary antibodies (ChemMate DAKO EnVision Detection Kit) and detection reagents. CD4+ and CD8+ cells were quantified by measuring the number of stained cells in sections from three mice in each group.
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Multiparametric Immune Profiling of Tumor Samples

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After the tumor blocks were fixed in 4% paraformaldehyde overnight, processed and then embedded by paraffin. The tumor tissues were cut into sections of 4 μm thickness, which were mounted on positively charged glass slides by the UArizona Cancer Center TACMASR Core facility for a series of IHC staining processes and procedures following our previous established protocols39 (link). Anti-interferon gamma (ab9657, 1/200), anti-PD-1 (ab137132, 1/500), anti-CD8α (ab209775, 1/100), anti-HMGB1 (ab18256, 1/400), anti-LRP1 (ab92544, 1/750), anti-calreticulin (ab2907, 1/400) and anti-granzyme B (ab4059, 1/100) were purchased from Abcam; anti-PD-L1 (#13684T, 1/75) was purchased from Cell Signaling. All antibodies were diluted in Bond Primary Antibody Diluent (AR9352, Leica). Granzyme B, CD8, HMGB1, and PD-L1 did not require a secondary antibody as they were rabbit antibodies and the HRP-conjugated polymer on the staining kit is against rabbit.
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4

Immunofluorescent Staining Protocol

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Post Xenium run, slides were kept hydrated in PBS-T (0.05% tween-20 in PBS) at 4°C. For post-Xenium immunofluorescent staining, PBS-T was removed and samples were blocked using universal blocking reagent CAS-Block, and stained with anti-CD8α (Abcam) overnight at 4°C, followed by 3 washes of PBS. Anti-rabbit AF594 secondary antibody in Dako antibody diluent was then added for 1 hour at room temperature in the dark, followed by 3 washes of PBS. The slides were then stained by WGA-FITC followed by DAPI staining, and then mounted with a coverslip using Vectashield mounting medium. Slides are dried for 1 hour at room temperature in the dark prior to imaging with Olympus VS200 Slide Scanner at 20X. Slides were then soaked in PBS at 4°C overnight to dismount coverslip and subsequently washed 3 times in PBS and twice in ddH2O before proceeding with H&E staining. The coverslip was mounted using xylene-based mounting media (Cytoseal XYL Epredia), slides were dried for 1 hour, and imaged used VS200 Slide Scanner at 20x.
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